View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14584_low_9 (Length: 307)

Name: NF14584_low_9
Description: NF14584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14584_low_9
NF14584_low_9
[»] chr5 (14 HSPs)
chr5 (103-294)||(37609635-37609822)
chr5 (210-294)||(38095856-38095940)
chr5 (149-206)||(38095512-38095569)
chr5 (149-203)||(16678766-16678820)
chr5 (149-188)||(32674956-32674995)
chr5 (149-193)||(38936314-38936358)
chr5 (149-201)||(12655265-12655317)
chr5 (149-201)||(20105095-20105147)
chr5 (149-201)||(23184050-23184102)
chr5 (149-201)||(23188317-23188369)
chr5 (149-201)||(30090355-30090407)
chr5 (149-201)||(34761311-34761363)
chr5 (149-201)||(39878145-39878197)
chr5 (149-201)||(3607940-3607992)
[»] chr6 (12 HSPs)
chr6 (210-294)||(25971385-25971469)
chr6 (210-294)||(25975825-25975909)
chr6 (1-81)||(9829857-9829937)
chr6 (149-205)||(25971041-25971097)
chr6 (149-205)||(25975481-25975537)
chr6 (210-294)||(2280615-2280699)
chr6 (149-201)||(2280988-2281040)
chr6 (149-201)||(33045782-33045834)
chr6 (1-40)||(8437838-8437877)
chr6 (149-188)||(29369514-29369553)
chr6 (149-188)||(29372069-29372108)
chr6 (149-188)||(33004773-33004812)
[»] chr3 (23 HSPs)
chr3 (210-294)||(18255916-18256000)
chr3 (149-209)||(18256284-18256344)
chr3 (209-294)||(38656267-38656352)
chr3 (210-282)||(36947501-36947573)
chr3 (210-294)||(52419139-52419223)
chr3 (217-269)||(31486932-31486984)
chr3 (149-201)||(18198762-18198814)
chr3 (149-188)||(854647-854686)
chr3 (149-188)||(26951579-26951618)
chr3 (152-191)||(36006254-36006293)
chr3 (149-188)||(36087591-36087630)
chr3 (149-188)||(38655924-38655963)
chr3 (149-188)||(49562410-49562449)
chr3 (149-201)||(4594171-4594223)
chr3 (149-201)||(16651479-16651531)
chr3 (149-201)||(26947907-26947959)
chr3 (149-201)||(36947158-36947210)
chr3 (149-188)||(11826548-11826587)
chr3 (149-188)||(36091429-36091468)
chr3 (161-192)||(53521078-53521109)
chr3 (148-201)||(12260886-12260939)
chr3 (149-201)||(13454884-13454936)
chr3 (160-188)||(52418807-52418835)
[»] chr1 (26 HSPs)
chr1 (210-294)||(23089620-23089704)
chr1 (210-294)||(37891880-37891964)
chr1 (149-209)||(37891536-37891596)
chr1 (210-287)||(29245131-29245208)
chr1 (210-294)||(48650688-48650772)
chr1 (161-205)||(23086208-23086252)
chr1 (210-294)||(50708545-50708629)
chr1 (210-294)||(13926643-13926727)
chr1 (149-201)||(45501289-45501341)
chr1 (149-188)||(2045250-2045289)
chr1 (145-187)||(21056874-21056916)
chr1 (149-201)||(7480558-7480610)
chr1 (149-201)||(9533934-9533986)
chr1 (149-201)||(13926303-13926355)
chr1 (152-200)||(26211701-26211749)
chr1 (149-201)||(29245500-29245552)
chr1 (149-201)||(38210995-38211047)
chr1 (149-201)||(39513257-39513309)
chr1 (149-201)||(48651064-48651116)
chr1 (149-201)||(49787358-49787410)
chr1 (149-201)||(50708921-50708973)
chr1 (1-40)||(3694051-3694090)
chr1 (1-40)||(35310316-35310355)
chr1 (149-188)||(42496655-42496694)
chr1 (149-188)||(45503534-45503573)
chr1 (149-188)||(48960785-48960824)
[»] chr4 (20 HSPs)
chr4 (210-291)||(36895997-36896078)
chr4 (152-209)||(36895658-36895715)
chr4 (210-269)||(21382345-21382404)
chr4 (210-269)||(29359548-29359607)
chr4 (210-294)||(16908735-16908819)
chr4 (149-193)||(26602412-26602456)
chr4 (210-294)||(28389073-28389157)
chr4 (149-193)||(8121111-8121155)
chr4 (149-188)||(16909115-16909154)
chr4 (150-201)||(28389449-28389500)
chr4 (149-188)||(30388031-30388070)
chr4 (149-188)||(52682792-52682831)
chr4 (149-201)||(21382696-21382748)
chr4 (1-40)||(2734186-2734225)
chr4 (149-188)||(29359215-29359254)
chr4 (149-188)||(31448460-31448499)
chr4 (149-188)||(42347798-42347837)
chr4 (1-37)||(24788646-24788682)
chr4 (1-37)||(24819578-24819614)
chr4 (148-188)||(41859873-41859913)
[»] scaffold1910 (1 HSPs)
scaffold1910 (210-291)||(991-1072)
[»] chr2 (22 HSPs)
chr2 (149-207)||(23455696-23455754)
chr2 (210-294)||(1512443-1512527)
chr2 (210-294)||(5013913-5013997)
chr2 (149-201)||(27997492-27997544)
chr2 (149-201)||(28098862-28098914)
chr2 (149-188)||(207806-207845)
chr2 (149-188)||(1512832-1512871)
chr2 (149-188)||(26455966-26456005)
chr2 (149-188)||(40605428-40605467)
chr2 (149-201)||(184179-184231)
chr2 (149-201)||(976085-976137)
chr2 (149-201)||(2449413-2449465)
chr2 (149-188)||(1916810-1916849)
chr2 (1-40)||(2884263-2884302)
chr2 (149-188)||(5013568-5013607)
chr2 (149-188)||(20890739-20890778)
chr2 (1-40)||(30517918-30517957)
chr2 (149-188)||(35432177-35432215)
chr2 (149-188)||(36437644-36437683)
chr2 (148-201)||(6123758-6123811)
chr2 (149-201)||(13905375-13905427)
chr2 (171-203)||(31226808-31226840)
[»] scaffold0097 (4 HSPs)
scaffold0097 (210-269)||(52262-52321)
scaffold0097 (149-188)||(49096-49135)
scaffold0097 (149-188)||(40446-40485)
scaffold0097 (149-188)||(51918-51957)
[»] chr8 (12 HSPs)
chr8 (210-294)||(19961298-19961382)
chr8 (210-294)||(23827438-23827522)
chr8 (149-188)||(23827818-23827857)
chr8 (149-201)||(19961674-19961726)
chr8 (148-188)||(24011856-24011896)
chr8 (149-188)||(14994481-14994520)
chr8 (210-245)||(37589302-37589337)
chr8 (149-188)||(37983448-37983487)
chr8 (149-187)||(18492360-18492398)
chr8 (149-201)||(406165-406217)
chr8 (149-181)||(18266003-18266035)
chr8 (149-181)||(18275016-18275048)
[»] chr7 (17 HSPs)
chr7 (210-294)||(45115499-45115583)
chr7 (211-294)||(26168513-26168596)
chr7 (171-209)||(35103013-35103051)
chr7 (149-201)||(29956522-29956574)
chr7 (149-201)||(46909393-46909445)
chr7 (149-188)||(7893815-7893854)
chr7 (149-188)||(22007038-22007077)
chr7 (149-188)||(26168902-26168941)
chr7 (149-188)||(32038501-32038540)
chr7 (149-188)||(32660282-32660321)
chr7 (149-201)||(7888912-7888964)
chr7 (149-201)||(45115875-45115927)
chr7 (149-188)||(13398415-13398454)
chr7 (1-40)||(27147604-27147643)
chr7 (148-201)||(16719945-16719998)
chr7 (149-201)||(27715989-27716041)
chr7 (149-185)||(31100199-31100235)
[»] scaffold0374 (1 HSPs)
scaffold0374 (149-201)||(2016-2068)
[»] scaffold0121 (1 HSPs)
scaffold0121 (149-188)||(45635-45674)
[»] scaffold0642 (1 HSPs)
scaffold0642 (149-201)||(3444-3496)
[»] scaffold0345 (1 HSPs)
scaffold0345 (149-201)||(13356-13408)
[»] scaffold0105 (1 HSPs)
scaffold0105 (149-201)||(25573-25625)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 103 - 294
Target Start/End: Complemental strand, 37609822 - 37609635
Alignment:
Q  103 caaaacaaagtgctacacatcattgtaacaaaacnnnnnnnngtgttacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatct 202  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37609822 caaaacaaagtgctacacatcattgtaacaaaa----aaaaagtgttacacattacggaaaacttctctgtagaccacatttgatgtcacatcagtatct 37609727  T
Q  203 tggccgtaaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37609726 tggccgtaaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcctcaataacatcacaggt 37609635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 38095856 - 38095940
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  38095856 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggt 38095940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 38095512 - 38095569
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggc 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38095512 tacacattacggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggc 38095569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 16678766 - 16678820
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatctt 203  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  16678766 tacacattacgaaaaacttctctgtagaccacatttgatgtcacatcagtatctt 16678820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 32674995 - 32674956
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32674995 tacacattatggaaaacttctctgtagaccacatttgatg 32674956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 38936314 - 38936358
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcaca 193  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||    
T  38936314 tacacattacggaaaacttctctatagaccacatttgatgtcaca 38936358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 12655317 - 12655265
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  12655317 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 12655265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 20105095 - 20105147
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  20105095 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 20105147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 23184102 - 23184050
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  23184102 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 23184050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 23188369 - 23188317
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  23188369 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 23188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 30090355 - 30090407
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  30090355 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 30090407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 34761363 - 34761311
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  34761363 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 34761311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 39878197 - 39878145
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  39878197 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 39878145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 3607940 - 3607992
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| | ||||||||||||||||||||| ||||||  ||||| |||||    
T  3607940 tacacattacgaaaaacttctctgtagaccacacttgatgcaacatcggtatc 3607992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 25971385 - 25971469
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  25971385 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggt 25971469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 25975825 - 25975909
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  25975825 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggt 25975909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 9829937 - 9829857
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttatatttaggaacgttagggagtatcttttatcgaacatatggaagaa 81  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  9829937 aaatacattaatttttgttgactaatttttacttatatttagggacgttagggagtatctcttatcgaacatatggaagaa 9829857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 25971041 - 25971097
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttgg 205  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  25971041 tacacattacggaaaacttctctctagaccacatttgatgtcacatcagtatcttgg 25971097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 25975481 - 25975537
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttgg 205  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  25975481 tacacattacggaaaacttctctctagaccacatttgatgtcacatcagtatcttgg 25975537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 2280699 - 2280615
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  2280699 aaattttcctatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 2280615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 2281040 - 2280988
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  2281040 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 2280988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 33045782 - 33045834
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  33045782 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 33045834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8437838 - 8437877
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttatattt 40  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  8437838 aaatacattaatttttgttgactaaattttacttatattt 8437877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 29369514 - 29369553
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29369514 tacacattacggaaaacttctttgtagaccacatttgatg 29369553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 29372069 - 29372108
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29372069 tacacattacggaaaacttctttgtagaccacatttgatg 29372108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 33004773 - 33004812
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  33004773 tacacattacggaaaacttctttgtagaccacatttgatg 33004812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 18256000 - 18255916
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  18256000 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggt 18255916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 18256344 - 18256284
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggccgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18256344 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggccgt 18256284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 38656267 - 38656352
Alignment:
Q  209 taaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  38656267 taaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 38656352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 36947501 - 36947573
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaat 282  Q
    |||||| |||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||| || |||||    
T  36947501 aaattttcccatctttgtaatgatcaatctcgtaccgttaaataagcccaaactttgatctatgttcctcaat 36947573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 52419139 - 52419223
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| | ||| |||||||| |||||||| ||||||||||||||||||||| ||||||||||| || ||| |||||| ||||||    
T  52419139 aaattttctcatatttgtaatgatcaatctagtaccgttacataagcccaaactttgatctatgttcctcagtaacatgacaggt 52419223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 31486984 - 31486932
Alignment:
Q  217 cccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatc 269  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  31486984 cccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatc 31486932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 18198814 - 18198762
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  18198814 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 18198762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 854686 - 854647
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  854686 tacacattacggaaaacttctctgtagaccacatttgatg 854647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 26951618 - 26951579
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26951618 tacacattacggaaaacttctctgtagaccacatttgatg 26951579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 36006293 - 36006254
Alignment:
Q  152 acattatggaaaacttctctgtagaccacatttgatgtca 191  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  36006293 acattacggaaaacttctctgtagaccacatttgatgtca 36006254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 36087591 - 36087630
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  36087591 tacacattacggaaaacttctctgtagaccacatttgatg 36087630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 38655924 - 38655963
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  38655924 tacacattacggaaaacttctctgtagaccacatttgatg 38655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 49562410 - 49562449
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  49562410 tacacattacggaaaacttctctgtagaccacatttgatg 49562449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 4594223 - 4594171
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  4594223 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 4594171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 16651531 - 16651479
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  16651531 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 16651479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 26947959 - 26947907
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  26947959 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 26947907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 36947158 - 36947210
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| |||||| |||||||||||||||||||||||  ||||| |||||    
T  36947158 tacacattacggaaaaattctctgtagaccacatttgatgcaacatcggtatc 36947210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 11826587 - 11826548
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  11826587 tacacattacggaaaacttctttgtagaccacatttgatg 11826548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 36091429 - 36091468
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  36091429 tacacattacggaaaacttctttgtagaccacatttgatg 36091468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 192
Target Start/End: Original strand, 53521078 - 53521109
Alignment:
Q  161 aaaacttctctgtagaccacatttgatgtcac 192  Q
    ||||||||||||||||||||||||||||||||    
T  53521078 aaaacttctctgtagaccacatttgatgtcac 53521109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 12260939 - 12260886
Alignment:
Q  148 ttacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    |||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  12260939 ttacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 12260886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 13454884 - 13454936
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| | ||||||||||||||||||||| ||||||  ||||| |||||    
T  13454884 tacacattacgaaaaacttctctgtagaccacacttgatgcaacatcggtatc 13454936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 52418807 - 52418835
Alignment:
Q  160 gaaaacttctctgtagaccacatttgatg 188  Q
    |||||||||||||||||||||||||||||    
T  52418807 gaaaacttctctgtagaccacatttgatg 52418835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 23089620 - 23089704
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23089620 aaatttacccatctttgtaataatcaatcttgtactgttacataagcccaaattttgatctatggtcctcaataacatcacaggt 23089704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 37891880 - 37891964
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  37891880 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctattgtcctcaataacatcacaggt 37891964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 37891536 - 37891596
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggccgt 209  Q
    ||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37891536 tacacattgcggaaaacttctttgtagaccacatttgatgtcacatcagtatcttggccgt 37891596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 29245208 - 29245131
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacat 287  Q
    |||||| | |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||| || ||| ||||||    
T  29245208 aaattttctcatctttgtaatgatcaatctcgtaccgttacataagcccaaaatttgatctatgttcctcagtaacat 29245131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 48650772 - 48650688
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  48650772 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 48650688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 23086208 - 23086252
Alignment:
Q  161 aaaacttctctgtagaccacatttgatgtcacatcagtatcttgg 205  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  23086208 aaaacttctctgtaaaccacatttgatgtcacatcagtatcttgg 23086252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 50708629 - 50708545
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| | |||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  50708629 aaattttcacatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 50708545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 13926643 - 13926727
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| |||||||||||||| ||||||||  |||| ||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  13926643 aaattttcccatctttgtaatgatcaatctcctaccattacataagcccaaactttgatccatgttcctgagtaacatgacaggt 13926727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 45501289 - 45501341
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  45501289 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 45501341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 2045250 - 2045289
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  2045250 tacacattacggaaaacttctctgtagaccacatttgatg 2045289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 21056916 - 21056874
Alignment:
Q  145 gtgttacacattatggaaaacttctctgtagaccacatttgat 187  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  21056916 gtgttacacattacggaaaacttctctgtagagcacatttgat 21056874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 7480610 - 7480558
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  7480610 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 7480558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 9533986 - 9533934
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  9533986 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 9533934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 13926303 - 13926355
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||| ||||||||||||||||||  ||||| |||||    
T  13926303 tacacattacggaaaacttctttgtagaccacatttgatgcaacatcggtatc 13926355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 26211749 - 26211701
Alignment:
Q  152 acattatggaaaacttctctgtagaccacatttgatgtcacatcagtat 200  Q
    |||||| ||||||||||| ||||||||||||||||||  ||||||||||    
T  26211749 acattacggaaaacttctttgtagaccacatttgatgcaacatcagtat 26211701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 29245552 - 29245500
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| |||||||||||||||||| |||||||||||  ||||| |||||    
T  29245552 tacacattacggaaaacttctctgtagatcacatttgatgcaacatcggtatc 29245500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 38210995 - 38211047
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||| ||||||||||||||||||  ||||| |||||    
T  38210995 tacacattacggaaaacttctttgtagaccacatttgatgcaacatcggtatc 38211047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 39513257 - 39513309
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||| ||||||||||||||||||||  ||||| |||||    
T  39513257 tacacattacggaaaacttatctgtagaccacatttgatgcaacatcggtatc 39513309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 48651116 - 48651064
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||| ||||||||||||||||  ||||| |||||    
T  48651116 tacacattacggaaaacttctctatagaccacatttgatgcaacatcggtatc 48651064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 49787358 - 49787410
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  49787358 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 49787410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 50708973 - 50708921
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    |||||||||  |||||||||||||||||||||||||||||  ||||| |||||    
T  50708973 tacacattacagaaaacttctctgtagaccacatttgatgcaacatcggtatc 50708921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3694051 - 3694090
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttatattt 40  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  3694051 aaatacattaatttttgttgaccaatttctacttatattt 3694090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35310316 - 35310355
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttatattt 40  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  35310316 aaatacattaatttttgttgaccaatttttacttatattt 35310355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 42496694 - 42496655
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  42496694 tacacattacggaaaacttctctgtagaccacacttgatg 42496655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 45503534 - 45503573
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  45503534 tacacattacggaaaacttctccgtagaccacatttgatg 45503573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 48960824 - 48960785
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  48960824 tacacattacggaaaacttctttgtagaccacatttgatg 48960785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 36895997 - 36896078
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcaca 291  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  36895997 aaatttacccatctttgtaataatcaatcttgtattgttacataagcccaaattttgatctatggtcctcaataacatcaca 36896078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 36895658 - 36895715
Alignment:
Q  152 acattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggccgt 209  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36895658 acattacggaaaacttctctgtagaccacatttgatgtcatatcagtatcttggccgt 36895715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 21382404 - 21382345
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatc 269  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  21382404 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatc 21382345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 29359548 - 29359607
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatc 269  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  29359548 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatc 29359607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 16908819 - 16908735
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  16908819 aaattttcctatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 16908735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 26602412 - 26602456
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcaca 193  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  26602412 tacacattatagaaaacttctctgtagaccacatttgatgtcaca 26602456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 28389157 - 28389073
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  28389157 aaattttcctatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 28389073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 8121155 - 8121111
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcaca 193  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  8121155 tacacattacggaaaacttctctgtagaccatatttgatgtcaca 8121111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 16909154 - 16909115
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  16909154 tacacattacggaaaacttctctgtagaccacatttgatg 16909115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 28389500 - 28389449
Alignment:
Q  150 acacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    |||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  28389500 acacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 28389449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 30388031 - 30388070
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  30388031 tacacattacggaaaacttctctgtagaccacatttgatg 30388070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 52682831 - 52682792
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  52682831 tacacattacggaaaacttctctgtagaccacatttgatg 52682792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 21382748 - 21382696
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||| ||||||||||||||||  ||||| |||||    
T  21382748 tacacattacggaaaacttctctatagaccacatttgatgcaacatcggtatc 21382696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2734225 - 2734186
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttatattt 40  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  2734225 aaatacattaacttttgttgactaatttttacttatattt 2734186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 29359215 - 29359254
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  29359215 tacacattacggaaaacttctttgtagaccacatttgatg 29359254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 31448460 - 31448499
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  31448460 tacacattacggaaaacttctttgtagaccacatttgatg 31448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 42347837 - 42347798
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  42347837 tacacattacggaaaacttctttgtagaccacatttgatg 42347798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24788682 - 24788646
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttata 37  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  24788682 aaatacattaatttttgttgattaatttttacttata 24788646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24819578 - 24819614
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttata 37  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  24819578 aaatacattaatttttgttgattaatttttacttata 24819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 41859873 - 41859913
Alignment:
Q  148 ttacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    |||||||||| | |||||||| |||||||||||||||||||    
T  41859873 ttacacattacgaaaaacttcactgtagaccacatttgatg 41859913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1910 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1910
Description:

Target: scaffold1910; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 991 - 1072
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcaca 291  Q
    |||||||||||| ||||||| |||||| ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  991 aaatttacccatatttgtaaaaatcaaacttgtattgttacataagcccaaattttgatctatggtcctcaataacatcaca 1072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 23455696 - 23455754
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatcttggcc 207  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  23455696 tacacattacggaaaaattctctgtagactacatttgatgtcacatcagtatcttggcc 23455754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 1512527 - 1512443
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  1512527 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 1512443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 5013913 - 5013997
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  5013913 aaattttcccatctttgtaattatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 5013997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 27997492 - 27997544
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  27997492 tacacattacggaaaacttctctgtagaccacatttgatgctacatcggtatc 27997544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 28098862 - 28098914
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  28098862 tacacattacggaaaacttctctgtagaccacatttgatgctacatcggtatc 28098914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 207845 - 207806
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  207845 tacacattacggaaaacttctctgtagaccacatttgatg 207806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 1512871 - 1512832
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  1512871 tacacattacggaaaacttctctgtagaccacatttgatg 1512832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 26456005 - 26455966
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26456005 tacacattacggaaaacttctctgtagaccacatttgatg 26455966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 40605467 - 40605428
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  40605467 tacacattacggaaaacttctctgtagaccacatttgatg 40605428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 184231 - 184179
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  184231 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 184179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 976085 - 976137
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  976085 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 976137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 2449465 - 2449413
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  2449465 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 2449413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 1916810 - 1916849
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  1916810 tacatattatggaaaacttctatgtagaccacatttgatg 1916849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2884302 - 2884263
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttatattt 40  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  2884302 aaatacattaatttttgttgacaaatttttacttatattt 2884263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 5013568 - 5013607
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  5013568 tacacattacgaaaaacttctctgtagaccacatttgatg 5013607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 20890778 - 20890739
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  20890778 tacacattacggaaaacttctttgtagaccacatttgatg 20890739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30517918 - 30517957
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttatattt 40  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  30517918 aaatacattaatttttgttgacaaatttttacttatattt 30517957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 35432177 - 35432215
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  35432177 tacacattatggaaaacttctctgtag-ccacatttgatg 35432215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 36437644 - 36437683
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  36437644 tacacattacggaaaacttctttgtagaccacatttgatg 36437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 6123811 - 6123758
Alignment:
Q  148 ttacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    |||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  6123811 ttacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 6123758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 13905427 - 13905375
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    |||| |||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  13905427 tacatattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 13905375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 31226840 - 31226808
Alignment:
Q  171 tgtagaccacatttgatgtcacatcagtatctt 203  Q
    |||||||||||||||||||||||| ||||||||    
T  31226840 tgtagaccacatttgatgtcacattagtatctt 31226808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 52262 - 52321
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatc 269  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  52262 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatc 52321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 49096 - 49135
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  49096 tacacattacggaaaacttctctgtagaccacatttgatg 49135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 40446 - 40485
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  40446 tacacattacggaaaacttctctgtagaccacacttgatg 40485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 51918 - 51957
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  51918 tacacattacggaaaacttctctatagaccacatttgatg 51957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 19961382 - 19961298
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| | |||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  19961382 aaattttctcatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 19961298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 23827522 - 23827438
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  23827522 aaattttcctatctttgtaatgatcaatctcgtaccgttacataagcccaaactttgatccatgttcctgagtaacatgacaggt 23827438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 23827857 - 23827818
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  23827857 tacacattacggaaaacttctctgtagaccacatttgatg 23827818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 19961726 - 19961674
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    |||||||||  |||||||||||||||||||||||||||||  ||||| |||||    
T  19961726 tacacattacagaaaacttctctgtagaccacatttgatgcaacatcggtatc 19961674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 24011856 - 24011896
Alignment:
Q  148 ttacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  24011856 ttacacattacggaaaacttctttgtagaccacatttgatg 24011896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 14994481 - 14994520
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  14994481 tacacattacggaaaacttctctgtagaccatatttgatg 14994520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 37589337 - 37589302
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtacc 245  Q
    |||||||||||||||| |||||||||||||||||||    
T  37589337 aaatttacccatctttataataatcaatcttgtacc 37589302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 37983448 - 37983487
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  37983448 tacacattacggaaaacttctttgtagaccacatttgatg 37983487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 18492398 - 18492360
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgat 187  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  18492398 tacacattacggaaaacttctttgtagaccacatttgat 18492360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 406165 - 406217
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  406165 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 406217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 18266003 - 18266035
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  18266003 tacacattacggaaaacttctctgtagaccaca 18266035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 18275016 - 18275048
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccaca 181  Q
    ||||||||| |||||||||||||||||||||||    
T  18275016 tacacattacggaaaacttctctgtagaccaca 18275048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 45115583 - 45115499
Alignment:
Q  210 aaatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||| ||| ||||||| ||| || | | |||||| ||||||    
T  45115583 aaattttcccatctttgtaatgatcaatctcgtaccgttacataagcctaaactttgatccatgttcctgagtaacatgacaggt 45115499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 26168596 - 26168513
Alignment:
Q  211 aatttacccatctttgtaataatcaatcttgtaccgttacataagcccaaattttgatctatggtcttcaataacatcacaggt 294  Q
    ||||| |||||||||||||| |||||||| ||||| ||||||||||||||| ||||||| ||| || | | |||||| ||||||    
T  26168596 aattttcccatctttgtaatgatcaatctcgtaccattacataagcccaaactttgatccatgttcctgagtaacatgacaggt 26168513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 35103051 - 35103013
Alignment:
Q  171 tgtagaccacatttgatgtcacatcagtatcttggccgt 209  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35103051 tgtagaccacatttgatgtcacatcagtatcttggccgt 35103013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 29956574 - 29956522
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  29956574 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 29956522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 46909445 - 46909393
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||| |||||    
T  46909445 tacacattatggaaaacttctatgtagaccacatttgatgcaacatcggtatc 46909393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 7893854 - 7893815
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  7893854 tacacattacggaaaacttctctgtagaccacatttgatg 7893815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 22007077 - 22007038
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  22007077 tacacattacggaaaacttctctgtagaccacatttgatg 22007038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 26168941 - 26168902
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  26168941 tacacattacggaaaacttctctgtagaccacatttgatg 26168902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 32038540 - 32038501
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32038540 tacacattacggaaaacttctctgtagaccacatttgatg 32038501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 32660321 - 32660282
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  32660321 tacacattacggaaaacttctctgtagaccacatttgatg 32660282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 7888964 - 7888912
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||| ||||||  ||||| |||||    
T  7888964 tacacattacggaaaacttctctgtagaccacacttgatgcaacatcggtatc 7888912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 45115927 - 45115875
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||| ||||||||||||||||  ||||| |||||    
T  45115927 tacacattacggaaaacttctctatagaccacatttgatgcaacatcggtatc 45115875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 13398415 - 13398454
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  13398415 tacacattacggaaaacttctttgtagaccacatttgatg 13398454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27147643 - 27147604
Alignment:
Q  1 aaatacattaatttttgttgactaatttatacttatattt 40  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  27147643 aaatacattaacttttgttgactaatttttacttatattt 27147604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 16719998 - 16719945
Alignment:
Q  148 ttacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    |||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  16719998 ttacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 16719945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 27716041 - 27715989
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  27716041 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 27715989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 31100235 - 31100199
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttg 185  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  31100235 tacacattacggaaaacttatctgtagaccacatttg 31100199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 2068 - 2016
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  2068 tacacattacggaaaacttctctgtagaccacatttgatgcaacatcggtatc 2016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 45674 - 45635
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  45674 tacacattacggaaaacttctctgtagaccacatttgatg 45635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 3496 - 3444
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  3496 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 3444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 13408 - 13356
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  13408 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 13356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 25573 - 25625
Alignment:
Q  149 tacacattatggaaaacttctctgtagaccacatttgatgtcacatcagtatc 201  Q
    ||||||||| |||||||||||||||||| |||| ||||||  ||||| |||||    
T  25573 tacacattacggaaaacttctctgtagatcacacttgatgcaacatcggtatc 25625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University