View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_high_1 (Length: 476)
Name: NF14585_high_1
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 6800004 - 6800398
Alignment:
| Q |
1 |
cacagtgagagtctcaagaccgttaacatca-tctatcaactctcttatattataccaatgtattattggttaaatgcataaatgtcacaaaaatttaag |
99 |
Q |
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| T |
6800004 |
cacagtgagagtctcaagaccgttaacatcaatctatcaactctcttatattataccaatgtattattggttaaatgcataaatgtcacaaaaatttaag |
6800103 |
T |
|
| Q |
100 |
cttatgggggaggaaatcaaaacacagaaaaagacaactttgagagtttcttcgccagaaatcaattcaaagcagctacacacaacaccatagatatcca |
199 |
Q |
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| T |
6800104 |
cttatgggggaggaaatcaaaacacagaaaaagacaactttgagagtttcttcgccagaaatcaattcaaagcagctacacacaacaccatagatatcca |
6800203 |
T |
|
| Q |
200 |
atgttctaagagagaaatgcaatcacattacaattctagaattgcattagccaaataatttcgttaatttcctccaacaacc-------agaattgtaac |
292 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6800204 |
atgttctaagcgagaaatgcaatcacattacaattctagaattgcattagccaaataatttcgttaatttcctccaacaaccagaattgagaattgtaac |
6800303 |
T |
|
| Q |
293 |
cacatgcaacaatttcaaaaaccaatctaatacactaaaatcaaacactacagcggctgcaacatcaaagctcttttaacttgagtaccacaatt |
387 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6800304 |
cacatgcaacaattttaaaaaccaatcgaatacactaaaatcaaacactacagcggctgcaacatcaaagctcttttaacttgagtaccacaatt |
6800398 |
T |
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