View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_high_2 (Length: 417)
Name: NF14585_high_2
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 8361594 - 8361966
Alignment:
| Q |
20 |
aagctttgttgtaattgggagatgttgaaagtgggagctggcaattgtctcgtttcagtagcctttgagattataccatcctttcttccttttggtactt |
119 |
Q |
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| T |
8361594 |
aagctttgttgtaattgggagatgttgaaagtgggagctggcaattgtctcgtttcagtagcctttgagattataccatcctttcttccttttggtactt |
8361693 |
T |
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| Q |
120 |
cccaatttggccctccggactaattaatgacatatatgacactcaaaaaatgtatt---aattgttactgcaacgtaacctttaaattatcataaaattc |
216 |
Q |
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| T |
8361694 |
cccaatttggccctccggactaat----gacat----gacactcaaaaaatgtattgttatttgttactgcaac-----ctttaaattattataa--ttc |
8361778 |
T |
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| Q |
217 |
atatcatcatttgtgattgtgacttaccagagtgacagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttcc |
316 |
Q |
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| T |
8361779 |
atatcatcatttgtgattgtgacttaccagagtgacagcgtctctagcagcaagagccaaaatatcagcacaagacacgacccctggacaaactgcttcc |
8361878 |
T |
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| Q |
317 |
aatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgctttattattctttccctttg |
407 |
Q |
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| T |
8361879 |
aatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgctttat---tctttccctttg |
8361966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 9058591 - 9058670
Alignment:
| Q |
311 |
gcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgcttt |
390 |
Q |
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| T |
9058591 |
gcttctaatgctttctttgcttcatcaatgacatagaatgcatgcaatgaaatgtttggcggtccatccttttctgcttt |
9058670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 390
Target Start/End: Complemental strand, 31748206 - 31748067
Alignment:
| Q |
251 |
acagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatg |
350 |
Q |
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||||| ||||| || |||| ||| ||||||||||||||||| || || || || ||| | ||||| ||||||||||| ||||||||||| | | | |||| |
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| T |
31748206 |
acagcatcccttgctgcaaaagctaagatatcagcacaagagactacaccagggcaagcagcttctaatgctttctttgcattatcaatgataaagaatg |
31748107 |
T |
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| Q |
351 |
catgcaatgatatgtttggaggtccatccttttctgcttt |
390 |
Q |
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| T |
31748106 |
catgcaaagatgcatttggtggtccatctttttctgcttt |
31748067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 297
Target Start/End: Complemental strand, 37111348 - 37111313
Alignment:
| Q |
262 |
agcagcaagagccaagatatcagcacaagacacgac |
297 |
Q |
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| T |
37111348 |
agcagcaagagccaaaatatcagcacaagacacgac |
37111313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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