View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_high_5 (Length: 383)
Name: NF14585_high_5
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_high_5 |
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| [»] scaffold2055 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 30222274 - 30221906
Alignment:
| Q |
1 |
aacatgggtaaatagta---taaataaataaaagcatgagtaagtagagaagaaaattaaacttacacaaatgagagaagnnnnnnnnnttaatgattga |
97 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30222274 |
aacatgggtaaatagtagtataaataaataaaagcatgagtaagtagagaagaaaattaaacttacacaaatgagagaa--aaaaaatattaatgattga |
30222177 |
T |
|
| Q |
98 |
aatagatacctctggtccacctgtcatggtgaaataaaatccatttattggatgatttgccaaagccattttctctactggtcctaccaagttagagata |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30222176 |
aatatatacctctggtccacctgtcatggtgaaataaaatccatttattggatgatttgccaaagccattttctctactggtcctaccaagttagagata |
30222077 |
T |
|
| Q |
198 |
acaacacttgaatttcccattgtgttatagattattttcgctacagcctgaaacatcaaccaaactaaattagagataacatagaac----atcatacat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30222076 |
acaacacttgaatttcccattgtgttatagattattttagctacagactgaaacaccaaccaaactaaattagagataacatagaacatatatcatacat |
30221977 |
T |
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| Q |
294 |
gaaattaaagaacctccaaactaagaaaaataattattcaattaaatttcatggtttatctttctactcat |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30221976 |
gaaattaaagaacctccaaactaagaaaaataattattcaattaaatttcatggtttatctttctactcat |
30221906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 252
Target Start/End: Original strand, 30030681 - 30030830
Alignment:
| Q |
103 |
atacctctggtccacctgtcatggtgaaataaaatccatttattggatgatttgccaaagccattttctctactggtcctaccaagttagagataacaac |
202 |
Q |
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| T |
30030681 |
atacctcaggtccacctgccacggtgaaatataatccatttactggatggtttgccaaagccattttttctatcggtcctacgaggttagacataaaaac |
30030780 |
T |
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| Q |
203 |
acttgaatttcccattgtgttatagattattttcgctacagcctgaaaca |
252 |
Q |
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| T |
30030781 |
acttgagttcctaattgtgttgtagattattttagctactgcctgaaaca |
30030830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 252
Target Start/End: Original strand, 30046988 - 30047137
Alignment:
| Q |
103 |
atacctctggtccacctgtcatggtgaaataaaatccatttattggatgatttgccaaagccattttctctactggtcctaccaagttagagataacaac |
202 |
Q |
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||||||| |||||||||||| ||||||||| ||||||| || ||||||||||||||||| ||| |||||||| |||||||| | |||||| || | ||| |
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| T |
30046988 |
atacctcaggtccacctgtcgcggtgaaatacaatccatatactggatgatttgccaaagtcatcttctctaccggtcctacgaggttagacattagaac |
30047087 |
T |
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| Q |
203 |
acttgaatttcccattgtgttatagattattttcgctacagcctgaaaca |
252 |
Q |
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| T |
30047088 |
acttgagttcccaattgtgttgtagattattttagctactgcctgaaaca |
30047137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 103 - 252
Target Start/End: Original strand, 30061329 - 30061478
Alignment:
| Q |
103 |
atacctctggtccacctgtcatggtgaaataaaatccatttattggatgatttgccaaagccattttctctactggtcctaccaagttagagataacaac |
202 |
Q |
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||||||| |||||||||||| ||||||||| ||||||| || ||||||||||||||||| ||| |||||||| |||||||| | |||||| || | ||| |
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| T |
30061329 |
atacctcaggtccacctgtcgcggtgaaatacaatccatatactggatgatttgccaaagtcatcttctctaccggtcctacgaggttagacattagaac |
30061428 |
T |
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| Q |
203 |
acttgaatttcccattgtgttatagattattttcgctacagcctgaaaca |
252 |
Q |
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|||||| || || |||||||| ||||||||||| ||||| |||||||||| |
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| T |
30061429 |
acttgagttcccaattgtgttgtagattattttagctactgcctgaaaca |
30061478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 252
Target Start/End: Original strand, 30227371 - 30227520
Alignment:
| Q |
103 |
atacctctggtccacctgtcatggtgaaataaaatccatttattggatgatttgccaaagccattttctctactggtcctaccaagttagagataacaac |
202 |
Q |
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||||||| |||||| ||||||||||||| | || ||||||| ||||||||||||||||| ||| ||||||||||| ||||| | ||| || |||| ||| |
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| T |
30227371 |
atacctcaggtccatttgtcatggtgaaacacaacccatttactggatgatttgccaaagtcatcttctctactggccctacaatgtttgacataagaac |
30227470 |
T |
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| Q |
203 |
acttgaatttcccattgtgttatagattattttcgctacagcctgaaaca |
252 |
Q |
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|||||| || || ||||||||||||||||||| ||||| ||||||||| |
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| T |
30227471 |
acttgagttcccagttgtgttatagattattttagctaccacctgaaaca |
30227520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2055 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold2055
Description:
Target: scaffold2055; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 492 - 650
Alignment:
| Q |
103 |
atacctctggtccacctgtcatggtgaaataaaatccatttattggatgatttgccaaagccattttctctactggtcctaccaagttagagataacaac |
202 |
Q |
| |
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||||||| |||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| | |||||| |||| ||| |
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| T |
492 |
atacctcaggtccacctgtcgcagtgaaatacaatccatttactggatgatttgccaaagccattttttctactggtcctacgaggttagacataagaac |
591 |
T |
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| Q |
203 |
acttgaatttcccattgtgttatagattattttcgctacagcctgaaacatcaaccaaa |
261 |
Q |
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|||||| || || || ||||| ||||||| ||| ||||| |||||||||| ||||||| |
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| T |
592 |
acttgagttcccaatagtgttgtagattactttagctactgcctgaaacacaaaccaaa |
650 |
T |
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