View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_high_6 (Length: 350)
Name: NF14585_high_6
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 187 - 342
Target Start/End: Original strand, 25379147 - 25379302
Alignment:
| Q |
187 |
aggatgctaatgagaggaaacaatctctaaggaagcgtaaaagatcatatgttgctggtgtggaggatgaccgtgataaaagctcaaggcagctgagaaa |
286 |
Q |
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| T |
25379147 |
aggatgctaatgagaggaaacaatctctaaggaagcgtaaaagatcatatgttgctggtgtggaggatgaccgtgataaaagctcaaggcagctgagaaa |
25379246 |
T |
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| Q |
287 |
acaagtagcttgtgaacatgttaaaaactcaaactcattgattgaggatgatgatg |
342 |
Q |
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| T |
25379247 |
acaagtagcttgtgaacatgttaaaaactcaaactcattgattgaggatgatgatg |
25379302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 25378975 - 25379080
Alignment:
| Q |
15 |
agaagagtttacaaactccgtagatagtcctacattagctgattttttaccgcacgacgttaccagaggaaaagaagtagacattgattattatgatttg |
114 |
Q |
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| T |
25378975 |
agaagagtttacaaactccgtagatagtcctacattagctgattttttaccgcacgacgttaccagaggaaaagaagtagacattaattattatgatttg |
25379074 |
T |
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| Q |
115 |
tcttgc |
120 |
Q |
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|||||| |
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| T |
25379075 |
tcttgc |
25379080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 38334045 - 38333982
Alignment:
| Q |
191 |
tgctaatgagaggaaacaatctctaaggaagcgtaaaagatcatatgttgctggtgtggaggat |
254 |
Q |
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| T |
38334045 |
tgctaatgagagaaaaaaatctctaaagaagcataaaatatcttctattgctggtgtggaggat |
38333982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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