View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_low_1 (Length: 481)
Name: NF14585_low_1
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 54479503 - 54479040
Alignment:
| Q |
1 |
cttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479503 |
cttggtgtgtttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtca |
54479404 |
T |
|
| Q |
101 |
gcaattaccggcttcacactgttttgttgattacagtgcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcatgtcgttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479403 |
gcaattaccggcttcacactgttttgttgattacagtgcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcatgtcgttcc |
54479304 |
T |
|
| Q |
201 |
tgttttcggtaacaaacttcaatatttcaggaaccttttctctcaaatcaaaagacatttggaacttttctttgcatttcttgcactgaacagctccggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54479303 |
tgttttcggtaacaaacttcaatatttcaggaaccttttctctcaaatgaaaagacatttggaacttttctttgcatttcttgcacggaacagctccggt |
54479204 |
T |
|
| Q |
301 |
gatattaactattctattttgcaagagatatttgtagctgtgaacggttgctctgcaatcagcggccatacaaaaggggcagggatgactacactttttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479203 |
gatattaactattctattttgcaagagatatttgtagctgtgaacggttgctctgcaatcagcggccatacaaaaggggcagggatgactacactttttc |
54479104 |
T |
|
| Q |
401 |
catctcgagttacttcaaagccattcatgatttctctgaagggatccatcgatgtgttgaaaga |
464 |
Q |
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| T |
54479103 |
catctcgagttacttcaaagccattcatgatatctctgaagggatccatcgatgtgttgaaaga |
54479040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 25040886 - 25040971
Alignment:
| Q |
244 |
caaatcaaaagacatttggaacttttctttgcatttcttgcactgaacagctccggtgatattaactattctattttgcaagagat |
329 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||||| |||||| | |||||||| |||| ||||| ||||| ||||||| |
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| T |
25040886 |
caaatcaaaagacatttggaactttgttttgcaactattgcattgaacatcgccggtgatgttaaagattctgttttgtaagagat |
25040971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 171
Target Start/End: Original strand, 25044391 - 25044551
Alignment:
| Q |
11 |
ttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccg |
110 |
Q |
| |
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||||| |||||||||| |||||| | |||| || || ||||||||||| || | |||||||| ||| |||||| || ||||| || ||||||| || |
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| T |
25044391 |
ttgcaaaaatacttcaattgtttaagattgcaacaacccagcatttgtcccaacagcagaaacaaccaattgatattcttcttcttctcggcaattatcg |
25044490 |
T |
|
| Q |
111 |
gcttcacactgttttgttgattacagtgcacacaattaggcaatgttggcttcatccaaat |
171 |
Q |
| |
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||||||||||||||| || || || |||||||| | |||||| |||| |||||| |||| |
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| T |
25044491 |
gcttcacactgttttctttgttgcaatgcacacatcttggcaatcttggattcatcaaaat |
25044551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 10124303 - 10124400
Alignment:
| Q |
47 |
ccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgattacagtgcacaca |
144 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||| || |||||| |||||||||||||| ||||||| ||||| |||||| || |||||||| |
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| T |
10124303 |
ccaagcatttgtcctagcaacagaaacaaccaattgatattctttttcttctcagcaattaccggtttcacacagttttcttgattgcaatgcacaca |
10124400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 28649868 - 28649982
Alignment:
| Q |
11 |
ttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccg |
110 |
Q |
| |
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||||| |||||||||| |||||| | |||| || |||||||||||||| || |||| ||||| ||| || ||| || |||||| |||||||||| || |
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| T |
28649868 |
ttgcaaaaatacttcaattgtttaagattgcaacaaccaagcatttgtcccaacaacaaaaacaaccaattaatattctttttcttctcagcaattatcg |
28649967 |
T |
|
| Q |
111 |
gcttcacactgtttt |
125 |
Q |
| |
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|||||||| |||||| |
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| T |
28649968 |
gcttcacattgtttt |
28649982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 1975173 - 1975327
Alignment:
| Q |
38 |
gtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccggcttcacactgttttgttgattacagt |
137 |
Q |
| |
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||||| || |||||||||||||| | |||| ||||| ||| ||||||||| |||||| | ||||||||| || |||||||| |||| |||||| || | |
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| T |
1975173 |
gtgcaacaaccaagcatttgtcccatcaacataaacaaccaattgatactctttttcttcttagcaattacaggtttcacactatttttttgattgcaat |
1975272 |
T |
|
| Q |
138 |
gcacacaattaggcaatgttggcttcatccaaatggttggcgccctgtcatgcat |
192 |
Q |
| |
|
| ||||| ||||||||| |||| | ||| ||||| ||||| ||||| ||| |||| |
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| T |
1975273 |
gtacacatttaggcaatattggatgcattcaaattgttggtgccctatcacgcat |
1975327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 21393189 - 21393068
Alignment:
| Q |
11 |
ttgcagaaatacttcagctgtttacgcgtgcagcagccaagcatttgtcctaataacagaaacagccagttgatactccgtttcttgtcagcaattaccg |
110 |
Q |
| |
|
||||| |||||||||| |||| | || |||| || || ||||||||||| | || ||||||| ||| |||||| || |||||| || |||||||||| |
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| T |
21393189 |
ttgcaaaaatacttcaattgttcaagcttgcaacaaccgagcatttgtcccagcaatagaaacaaccaattgatattctttttcttctcggcaattaccg |
21393090 |
T |
|
| Q |
111 |
gcttcacactgttttgttgatt |
132 |
Q |
| |
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| ||||||||||||| |||||| |
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| T |
21393089 |
gtttcacactgttttcttgatt |
21393068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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