View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_low_11 (Length: 300)
Name: NF14585_low_11
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_low_11 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0034 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 3208946 - 3209244
Alignment:
| Q |
1 |
tcaacaaccacaaccttaacagacttctcatcctcaacaacaacctcaagaagaacaagcgctgacccagatcgtgacttctcatcctctcacatagaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208946 |
tcaacaaccacaaccttaacagacttctcatcctcaacaacaacctcaagaagaacaagcgctgacccagatcgtgacttctcatcctctcacatagaac |
3209045 |
T |
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| Q |
101 |
ctcatatcctcgcaccaagacccggttttgaaacaacaagcgctgacccagattgtgactctccttcaccgtcgctgaaacaacgtttggtatcaaagct |
200 |
Q |
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||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
3209046 |
ctcatatcctcgcaccaagacacagttttgaaacaataagcgctgacccagattgtgactctccttcaccgtcgctg-aacaacgtttggtatcgaagct |
3209144 |
T |
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| Q |
201 |
accaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactctgaaacgcctcattcaaaacaaccaccgca |
300 |
Q |
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| T |
3209145 |
accaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactctgaaacgcctcattcaaaacaaccaccgca |
3209244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 108775 - 109071
Alignment:
| Q |
1 |
tcaacaaccacaaccttaacagacttctcatcctcaacaacaacctcaagaagaacaagcgctgacccagatcgtgacttctcatcctctcacatagaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108775 |
tcaacaaccacaaccttaacagacttctcatcctcaacaact---tcaagaagaacaagcgctgacccagatcgtgacttctcatcctctcacatagaac |
108871 |
T |
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| Q |
101 |
ctcatatcctcgcaccaagacccggttttgaaacaacaagcgctgacccagattgtgactctccttcaccgtcgctgaaacaacgtttggtatcaaagct |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
108872 |
ctcatatcctcgcaccaagacacggttttgaaacaacaaacgctgacccagattgtgactctccttcaccatcgctgaaacaacgtttggtatcgaagct |
108971 |
T |
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| Q |
201 |
accaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactctgaaacgcctcattcaaaacaaccaccgca |
300 |
Q |
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| T |
108972 |
accaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactctgaaacgcctcattcaaaacaaccaccgca |
109071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 31283374 - 31283270
Alignment:
| Q |
196 |
aagctaccaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactctgaaacgcctcattcaaaacaacca |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |
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| T |
31283374 |
aagctaccaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactccgaaacgccgcatgcaaaacaacca |
31283275 |
T |
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| Q |
296 |
ccgca |
300 |
Q |
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||||| |
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| T |
31283274 |
ccgca |
31283270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36170032 - 36169979
Alignment:
| Q |
1 |
tcaacaaccacaaccttaacagacttctcatcctcaacaacaacctcaagaaga |
54 |
Q |
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|||||||| | |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
36170032 |
tcaacaacaataaccttaacatacttttcatcctcaacaacaacctcaagaaga |
36169979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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