View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_low_13 (Length: 278)
Name: NF14585_low_13
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 33183020 - 33183122
Alignment:
| Q |
15 |
aaaagaatcagtacaatccacaataccatagctgctagattcaatccttgggggcacgagtgaatcacagcatccggaacaaacaaacaaaggtgtaact |
114 |
Q |
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| T |
33183020 |
aaaagaatcagcacaatcgaccataccaaagctgctagattcaatccttggtggcataagtgaatcacagcatccagaacaaacaaacaaaggtggaact |
33183119 |
T |
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| Q |
115 |
gtc |
117 |
Q |
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||| |
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| T |
33183120 |
gtc |
33183122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 33183200 - 33183267
Alignment:
| Q |
123 |
atcatcttgtgctccacactcacacctcactt-ccaattatcacttcctccttgatatttcaatggag |
189 |
Q |
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| T |
33183200 |
atcatcttgtgctccacactcacacctcactttccaattatcacttcctccttgatatttcaatggag |
33183267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 33183300 - 33183377
Alignment:
| Q |
188 |
agcttcacaccagattcaatccgtccaaaaaacacttctccatcatccacatccatcaattatttgagatctgtcact |
265 |
Q |
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||||||||||||||||||||| ||||||||| ||||||| |||| || ||||||||||||| ||||| |||||||||| |
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| T |
33183300 |
agcttcacaccagattcaatctgtccaaaaatcacttcttcatcttctacatccatcaattctttgatatctgtcact |
33183377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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