View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14585_low_16 (Length: 208)
Name: NF14585_low_16
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_low_16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 36373222 - 36373415
Alignment:
| Q |
15 |
atcaagactactttacgggaagtttttgtctgatctttcctggtttgttaccgcgtcatcgttaaataaggtttcatatgtcataagatcggttcaaaac |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36373222 |
atcaagactacttttcgggaagtttttgtctgatctttcccggtttgttaccgcgtcatcgttaaagaaggtttcatatgtcataagatcggttcaaaac |
36373321 |
T |
|
| Q |
115 |
aagattgtgtatgaagttatgggcaatgatcctaatattagtggtcctatgaatgttttgaacttcaaatcctgtgatgatggtaagagtggtc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373322 |
aagattgtgtatgaagttatgggcaatgatcctaatattagtggtccaatgaatgttttgaacttcaaatcctgtgatgatggtaagagtggtc |
36373415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 32252580 - 32252523
Alignment:
| Q |
97 |
ataagatcggttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatatta |
154 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||||| |||||| || |||||| |
|
|
| T |
32252580 |
ataagatctgtgcaaaacaagattgtgtatcaagttatgggaaatgatactgatatta |
32252523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University