View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_low_4 (Length: 411)
Name: NF14585_low_4
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_low_4 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0411 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 50804717 - 50805118
Alignment:
| Q |
10 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804717 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50804816 |
T |
|
| Q |
110 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
209 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50804817 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50804916 |
T |
|
| Q |
210 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804917 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50805016 |
T |
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| Q |
310 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805017 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
50805116 |
T |
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| Q |
410 |
tt |
411 |
Q |
| |
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|| |
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| T |
50805117 |
tt |
50805118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Complemental strand, 50871160 - 50870759
Alignment:
| Q |
10 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871160 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50871061 |
T |
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| Q |
110 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
209 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50871060 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50870961 |
T |
|
| Q |
210 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870960 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50870861 |
T |
|
| Q |
310 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870860 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
50870761 |
T |
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| Q |
410 |
tt |
411 |
Q |
| |
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|| |
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| T |
50870760 |
tt |
50870759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Complemental strand, 19057467 - 19057070
Alignment:
| Q |
14 |
catcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagagacta |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
19057467 |
catcaggacatcctacaatcacacataacatacattagtcttggcattgtggtcctacctaactccggggatttgtttctaccattgtgagcagagaata |
19057368 |
T |
|
| Q |
114 |
cacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057367 |
cacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
19057268 |
T |
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| Q |
214 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057267 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
19057168 |
T |
|
| Q |
314 |
gctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacctt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
19057167 |
gctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagatatatgaacccgtaaaggatacctt |
19057070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 321 - 411
Target Start/End: Original strand, 11181 - 11270
Alignment:
| Q |
321 |
aaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacctt |
411 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
11181 |
aaaaaaaaaacaacagatgaagaagttatttgctaaaggagtatttaaatataaaattg-ttaagatatatgaacccgtaaaggttacctt |
11270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 171 - 280
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
171 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
261 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
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| Q |
262 |
cgtaggtagaaccatcttg |
280 |
Q |
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||||||||||||||||||| |
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| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 411
Target Start/End: Complemental strand, 40705780 - 40705689
Alignment:
| Q |
316 |
tagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacctt |
411 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
40705780 |
tagacaaaaaacaaacaa---atgaataagttatttgctaaaggagtatttaaatataaaactg-ttaagatatatgaacccgtaaaagttacctt |
40705689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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