View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_low_8 (Length: 341)
Name: NF14585_low_8
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 130 - 324
Target Start/End: Complemental strand, 39844667 - 39844473
Alignment:
| Q |
130 |
ccaactgaaaccaatatataatttccatggtaaattcatctaaacttagatcgatatatcaagtgatagttatgcacaaaccaaaatgaacacgaaaaat |
229 |
Q |
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| T |
39844667 |
ccaactaaaaccaatatataattttcatggtaaattcatctaaacttagatcgatatatcaagtgatagttatgcacaaaccaaaatgaacacgaaaaat |
39844568 |
T |
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| Q |
230 |
tattagttaaggtctgaaaaactagctatttttgtaccaaaaaattatatcacacgaattactactattgttgacacaaatttgaaggtattatt |
324 |
Q |
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| T |
39844567 |
tattagttaaggtctgaaaaactagctatttttgtaccaaaaaattatatcacacgaattactactattgttgacacaaatttgaaggtattatt |
39844473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 39844789 - 39844722
Alignment:
| Q |
8 |
ccaataatatctaccaacaaatgagtcaaaaaggaatctcatatgacaacaaaatcttgaaaaaggac |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39844789 |
ccaataatatctaccaacaaatgagtcaaaaaggaatctcatatgacaacaaaatcttgaaaaaggac |
39844722 |
T |
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