View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14585_low_9 (Length: 323)
Name: NF14585_low_9
Description: NF14585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14585_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 110 - 309
Target Start/End: Original strand, 28630270 - 28630469
Alignment:
| Q |
110 |
gaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctgttgattcacctagtttgtaaatagtataattgt |
209 |
Q |
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| T |
28630270 |
gaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctgttgattcacctagtttgtaaatagtataattgt |
28630369 |
T |
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| Q |
210 |
catatgtagttttatacttggccatatgtttagattaatagtttggaaatacattaatcatcatatgcttgtattgtagagctacaatattattgatatt |
309 |
Q |
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| T |
28630370 |
catatgtagttatatacttggccatatgtttagattaatagtttggaaatacattaatcatcatatgcttgtattgtagagctacaatattattgatatt |
28630469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 28615943 - 28616068
Alignment:
| Q |
77 |
aatgtaacaccatcatcaaatttttggattaaggaggatgctaatgagttgttaccatttgataattgggatgagcttggatcagttgtgaggtttgctg |
176 |
Q |
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| T |
28615943 |
aatgtaacacaatcttcaaatttttggattaagcaagctgctaatgagttattatcatttgataattgggatgagcttggatcagttgtgaattttgttt |
28616042 |
T |
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| Q |
177 |
ttgattcacctagtttgtaaatagta |
202 |
Q |
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| T |
28616043 |
cagattcacctagtatgtaaatagta |
28616068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 28630201 - 28630260
Alignment:
| Q |
20 |
gacaaaccagtcaataactatacaagcagtgaccaaagcaatcagtttcatggaaacaat |
79 |
Q |
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| T |
28630201 |
gacaaaccagtcaataactatacaagcagtgaccaaagcaatcagtttcatggaagcaat |
28630260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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