View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_high_10 (Length: 382)
Name: NF14586_high_10
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 47242432 - 47242779
Alignment:
| Q |
14 |
atgaatcacagcaagtgcaaataaacataattagtccaattaacttcatttcaacaaggctttagatattcaaatttacaataaaaaatgtatttacttt |
113 |
Q |
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| T |
47242432 |
atgaatcacagcaagtgaaaataaacagaattagtccaattaacttcatttcaacaaggctttagatattcaaattcacaataaaaaatgtatttacttt |
47242531 |
T |
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| Q |
114 |
agaaatgtgatgacattagggttgcccatttcaaagttcagggttttgagtatgtcagcttccatcttcaaaacctatattaacaacaaacaacatacat |
213 |
Q |
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| T |
47242532 |
agaaatgtgatgacattagggttgcccatttcaaagttcagggttttgagtatgtcagcttccatcttcaaaacctatattaacaacaaacaacatacat |
47242631 |
T |
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| Q |
214 |
gagaaacaaagcaatacaagaaagnnnnnnnntgaaataaaataattcaatcaagaacaaaatttgattcaagaccagataaaagaatactacattacct |
313 |
Q |
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| T |
47242632 |
gagaaacaaagcaatacaagaaa---aaaaaatgaaataaaattattcaatcaagaacaaaatttgattcaagaccagataaaagaatactacattacct |
47242728 |
T |
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| Q |
314 |
cgtcaagatcatatgtgttatcagtgatttggcagaaatctatggcctttg |
364 |
Q |
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| T |
47242729 |
cgtcaagatcatatgtgttatcagtgatttggcagaaatctatggcctttg |
47242779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 47248893 - 47249041
Alignment:
| Q |
29 |
tgcaaataaacataattagtccaattaacttcatttcaacaaggctttagatattcaaatttacaataaaaaatgtatttactttagaaatgtgatgaca |
128 |
Q |
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| T |
47248893 |
tgcacataaacatggtcagtccaattat-ttcatttcagcaaggatttatatattcaactttacagtaataaatgtccttacttaagaaatgttatcaca |
47248991 |
T |
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| Q |
129 |
ttagggttgcccatttcaaagttcagggttttgagtatgtcagcttccat |
178 |
Q |
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| T |
47248992 |
ttagggttgcccatttcaaagtttagggacttaagtatgtcagcttccat |
47249041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 47253696 - 47253871
Alignment:
| Q |
15 |
tgaatcacagcaagtgcaaataaacataattagtccaattaacttcatttcaacaaggctttagatattcaaatttacaataaaaaatgtatttacttta |
114 |
Q |
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|||| ||||| || |||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||| || || |||||| | |
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| T |
47253696 |
tgaaacacagtaattgcacataaacacaattaatccaattaacttcatttcaattaggctttagatattgaaattaacaatattaacagtccttacttga |
47253795 |
T |
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| Q |
115 |
gaaatgtgatgacattagggttgcccatttcaaagttcagggttttgagtatgtcagcttccatcttcaaaaccta |
190 |
Q |
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| T |
47253796 |
gaaaagtgttaacatgagggttgcccatttcaaaattcaatgacttaagaatatcagcttccatcttaataaccta |
47253871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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