View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_high_22 (Length: 245)
Name: NF14586_high_22
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 14970708 - 14970935
Alignment:
| Q |
1 |
tgaatcagctgatttcgatagctgtccatctgcaaaatataaacatttcatttgtattacaagccattcaccaaatatcaatcaatatataggcactagt |
100 |
Q |
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| T |
14970708 |
tgaatcagctgatttcgatagttgtccatctgcaaaatataaacatttcatttgtattacaagccattcaccaaatatcaatcaatatataggtactagt |
14970807 |
T |
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| Q |
101 |
cataaattactagttaattacttacctgaatattaatataatcttctgtatcatcaatatactctcttagctgtaaatggaaacgtctaattagaacaat |
200 |
Q |
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| T |
14970808 |
cataaatt-----------acttacctgaatattaatataatcttctgtatcatcaatatactctcttagctgtaaatggaaacgtctaattagaactat |
14970896 |
T |
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| Q |
201 |
gtgctaaattgcatgattaaccatgatatattccttcat |
239 |
Q |
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| T |
14970897 |
gtgctaaattgcatgattaaccttgatatattccttcat |
14970935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 14987910 - 14987975
Alignment:
| Q |
118 |
ttacttacctgaatattaatataatcttctgtatcatcaatatactctcttagctgtaaatggaaa |
183 |
Q |
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| T |
14987910 |
ttacttacctgaatattaatgtaatcttctgtatcatcaatgtaccctcgaagctgtaaatagaaa |
14987975 |
T |
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