View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_high_3 (Length: 532)
Name: NF14586_high_3
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 25865626 - 25865250
Alignment:
| Q |
18 |
atgaaagcaaccatgtctattatattaatagtttctctggggaatgtgaagtgtattcagcgagtaataacgaactgataaaatgcatcgtgccaactgg |
117 |
Q |
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| T |
25865626 |
atgaaagcaaccatgtgtattatattaatagtttctctggggaatgtgaagtgtattcagcgagtaataacgaactgataaaatgcattgtgcctactgg |
25865527 |
T |
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| Q |
118 |
tagaccttgtcttcatcagagatcaaaatttcattggctggattggtgttttcgtcatctacatgatgaagttgattattctctagttgaatagtctgct |
217 |
Q |
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| T |
25865526 |
tagaccttgtcttcatccgagatcaaaatttcattggctcgattggtgttttcgtcatctacatgatgaagttgattattctctagttgaatagtctgct |
25865427 |
T |
|
| Q |
218 |
atctaggcacccatgcttacaacttgttattgtcttatgtttaaattttgttccttctgtttcccttttattttcgtatactttgattagcctggaaaag |
317 |
Q |
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| T |
25865426 |
aactaggca-ccatgcttacaacttgttaatgtctcatgtttaaattttgttccttctgtttcccttttattttcgtatactttgattagcctggaaaag |
25865328 |
T |
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| Q |
318 |
cttgtcatggtttttataatttcattatccctgctaagattatgtgactctcgatgaatatgacttatgaactcggtc |
395 |
Q |
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| T |
25865327 |
cttgtcatggtttctataatttcattatccctgctcagattatgtgactcttgatgaatatgacttatgaactcggtc |
25865250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 25861517 - 25861479
Alignment:
| Q |
451 |
caatgtctcttttcatgttcactcgctaactttagattt |
489 |
Q |
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| T |
25861517 |
caatgtctcttttcatgttcactcgctaactttagattt |
25861479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 390
Target Start/End: Complemental strand, 25850109 - 25850029
Alignment:
| Q |
309 |
ctggaaaagcttgtcatggtttttataatttcattatccctgctaagattatgtgactctcgatgaatatgacttatgaact |
390 |
Q |
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|||||||| ||| |||| |||| |||| |||||||||| |||| ||||||||||| | | || |||||||||||||||||| |
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| T |
25850109 |
ctggaaaaacttttcatagtttctatagtttcattatctttgctcagattatgtga-tttagaagaatatgacttatgaact |
25850029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 523
Target Start/End: Complemental strand, 25861488 - 25861459
Alignment:
| Q |
494 |
ctttagattttactcttgttggtttgattt |
523 |
Q |
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| T |
25861488 |
ctttagattttactcttgttggtttgattt |
25861459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 32347420 - 32347368
Alignment:
| Q |
158 |
gattggtgttttcgtcatctacatgatgaagttgattattctctagttgaata |
210 |
Q |
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| T |
32347420 |
gattggtgttttagacatctacaatctgaagtagattattctctagttgaata |
32347368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 182 - 344
Target Start/End: Original strand, 17247989 - 17248150
Alignment:
| Q |
182 |
gatgaagttgattattctctagttgaatagtctgctatctaggcacccatgcttacaacttgttattgtcttatgtttaaattttgttccttctgtttcc |
281 |
Q |
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| T |
17247989 |
gatgaagttgattattctttggttcaataatcggctaatttggcacc-atgcgtgcaactttttactctcttatatttggatattgttccttttgtttct |
17248087 |
T |
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| Q |
282 |
cttttattttcgtatactttgattagcctggaaaagcttgtcatggtttttataatttcatta |
344 |
Q |
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| T |
17248088 |
cttttaatttcttatactctgattagaccggaaaaacttgtcatggtttctataatttcatta |
17248150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 14964418 - 14964467
Alignment:
| Q |
158 |
gattggtgttttcgtcatctacatgatgaagttgattattctctagttga |
207 |
Q |
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| T |
14964418 |
gattggtgttttagacatctacaatatgaagtagattattctctagttga |
14964467 |
T |
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