View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14586_high_35 (Length: 215)

Name: NF14586_high_35
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14586_high_35
NF14586_high_35
[»] chr7 (4 HSPs)
chr7 (111-198)||(25439719-25439806)
chr7 (111-192)||(28491167-28491248)
chr7 (111-198)||(13465310-13465397)
chr7 (113-173)||(37202551-37202610)
[»] chr1 (2 HSPs)
chr1 (111-198)||(30950967-30951054)
chr1 (111-198)||(29799211-29799297)
[»] chr6 (3 HSPs)
chr6 (111-198)||(1780801-1780888)
chr6 (133-165)||(29486224-29486256)
chr6 (135-173)||(27673842-27673880)
[»] chr8 (3 HSPs)
chr8 (111-198)||(12491418-12491505)
chr8 (110-173)||(6115222-6115285)
chr8 (110-173)||(32415643-32415706)
[»] chr3 (3 HSPs)
chr3 (111-198)||(40763665-40763752)
chr3 (110-177)||(20843366-20843433)
chr3 (111-177)||(3458257-3458323)
[»] chr2 (4 HSPs)
chr2 (111-198)||(16546206-16546293)
chr2 (120-177)||(45656125-45656182)
chr2 (112-198)||(39070384-39070459)
chr2 (111-183)||(26180409-26180480)
[»] chr4 (3 HSPs)
chr4 (109-177)||(22785878-22785946)
chr4 (108-177)||(2407004-2407073)
chr4 (120-177)||(6016989-6017046)
[»] chr5 (4 HSPs)
chr5 (109-198)||(40528316-40528405)
chr5 (109-161)||(7008759-7008811)
chr5 (135-173)||(34033839-34033877)
chr5 (120-161)||(16908940-16908981)
[»] scaffold0361 (1 HSPs)
scaffold0361 (125-173)||(6918-6966)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 25439806 - 25439719
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25439806 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatatt 25439719  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 28491167 - 28491248
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaatt 192  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28491167 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaatt 28491248  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 13465310 - 13465397
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13465310 caggggtgcaacccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatatt 13465397  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 37202551 - 37202610
Alignment:
Q  113 ggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctt 173  Q
    |||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||    
T  37202551 ggggcgtagcctttccttgccaaggggtagccttggcta-cccaaaaaatatattattctt 37202610  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 30951054 - 30950967
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30951054 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttggtgtaaattaatatt 30950967  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 29799297 - 29799211
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    |||||||| |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||| | |||||| |||||    
T  29799297 caggggcgtagcccttcattggcaaggggtagccttggcta-cccaaaaaatatattaatctttaattggttggtataaatttatatt 29799211  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 1780888 - 1780801
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1780888 caggggcgcagcccttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaatgagttggtgtaaattaatatt 1780801  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 29486224 - 29486256
Alignment:
Q  133 caaggggtagccttggctaccccaaaaaatata 165  Q
    |||||||||||||||||||||||||||||||||    
T  29486224 caaggggtagccttggctaccccaaaaaatata 29486256  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 27673842 - 27673880
Alignment:
Q  135 aggggtagccttggctaccccaaaaaatatattaatctt 173  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  27673842 aggggtagccttggctaccccaaaaaaaatattattctt 27673880  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 12491418 - 12491505
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    |||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||    
T  12491418 caggggcgcaacccttcattgacaaggggtagccttggctactccaaaaaatatattaatctttaataagttggtgcaaattaatatt 12491505  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 6115285 - 6115222
Alignment:
Q  110 tcaggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctt 173  Q
    ||||||||| | |||||||||   |||||||||||||||||||||||||||| |||||| ||||    
T  6115285 tcaggggcgtatcctttcattaggaaggggtagccttggctaccccaaaaaaaatattattctt 6115222  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 32415643 - 32415706
Alignment:
Q  110 tcaggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctt 173  Q
    ||||||||| |||| ||||  ||||||||||| | |||||||||| ||||||||||||| ||||    
T  32415643 tcaggggcgtagcccttcaacgacaaggggtaactttggctacccaaaaaaatatattattctt 32415706  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 40763665 - 40763752
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    |||||||||| || |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40763665 caggggcgcaacccttcattgacaagaggtagccttggttaccccaaaaaatatattaatctttaataagttggtgtaaattaatatt 40763752  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 20843433 - 20843366
Alignment:
Q  110 tcaggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaat 177  Q
    ||||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  20843433 tcaggggcgtagccctttattggcaaggggtagccttggctaccccaaaaaatatattaatatttaat 20843366  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 3458323 - 3458257
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaat 177  Q
    |||||||| |||| ||||||| |||  ||||||||||||||||| ||||||||||||||||||||||    
T  3458323 caggggcgtagcccttcattggcaacaggtagccttggctacccaaaaaaatatattaatctttaat 3458257  T

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Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 16546206 - 16546293
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    |||||||||| |  |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  16546206 caggggcgcaactcttcattgacaagggttagccttggctaccccaaaaaatatattaaactttaataagttggtgtaaatttatatt 16546293  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 45656182 - 45656125
Alignment:
Q  120 agcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaat 177  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  45656182 agcccttcattggcaaggggtagccttggctaccccaaaaaatatattaatttttaat 45656125  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 39070459 - 39070384
Alignment:
Q  112 aggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    |||||||||||| ||||||||||||||||||           |||||||||||||||||||||||||||||| |||||||| |||||    
T  39070459 aggggcgcagcccttcattgacaaggggtag-----------ccaaaaaatatattaatctttaataagttggtgtaaatttatatt 39070384  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 26180409 - 26180480
Alignment:
Q  111 caggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttg 183  Q
    |||||||| |||| |||||  |||||| ||||||||||||| |||||||||||||||||| || ||| |||||    
T  26180409 caggggcgtagcccttcatatacaaggagtagccttggcta-cccaaaaaatatattaattttgaattagttg 26180480  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 22785878 - 22785946
Alignment:
Q  109 atcaggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaat 177  Q
    |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22785878 atcaggggcgtagcccttcattggcaaggggtagccttggctaccccaaaaaatatattaatctttaat 22785946  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 2407004 - 2407073
Alignment:
Q  108 aatcaggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaat 177  Q
    ||||||||| | | || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  2407004 aatcaggggtgtaacccttcattggcaaggggtagccttggctacctcaaaaaatatattaatctttaat 2407073  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 6017046 - 6016989
Alignment:
Q  120 agcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaat 177  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  6017046 agcccttcattggcaaggggtagccttggctaccccaaaaattatattaatctttaat 6016989  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 40528405 - 40528316
Alignment:
Q  109 atcaggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaatatattaatctttaataagttgatgtaaattaatatt 198  Q
    ||||| |||| |||| ||||||| |||||| ||| ||||||||||  ||||||||||||||||||||||  |||| | |||||| |||||    
T  40528405 atcagtggcgtagcccttcattggcaagggatagtcttggctaccttaaaaaatatattaatctttaattggttggtataaatttatatt 40528316  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 7008759 - 7008811
Alignment:
Q  109 atcaggggcgcagcctttcattgacaaggggtagccttggctaccccaaaaaa 161  Q
    |||||||||| | ||||||||||  |||||||||||||||||||| |||||||    
T  7008759 atcaggggcgtatcctttcattgtgaaggggtagccttggctacctcaaaaaa 7008811  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 34033839 - 34033877
Alignment:
Q  135 aggggtagccttggctaccccaaaaaatatattaatctt 173  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  34033839 aggggtagccttggctaccccaaaaaaaatattattctt 34033877  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 16908981 - 16908940
Alignment:
Q  120 agcctttcattgacaaggggtagccttggctaccccaaaaaa 161  Q
    |||| ||||| ||||||||| |||||||||||||||||||||    
T  16908981 agcccttcatggacaaggggcagccttggctaccccaaaaaa 16908940  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 6918 - 6966
Alignment:
Q  125 ttcattgacaaggggtagccttggctaccccaaaaaatatattaatctt 173  Q
    ||||| || ||| |||||||||||||||||| |||||||||||| ||||    
T  6918 ttcatagataagaggtagccttggctacccccaaaaatatattattctt 6966  T

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