View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_high_4 (Length: 502)
Name: NF14586_high_4
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 16017181 - 16016705
Alignment:
| Q |
18 |
ggtatatcaggcgcacgttgttgctcagactcgaaactgggttggaaggaagattcaaattctaaattttctttgagaagattttgagcttgagcatgga |
117 |
Q |
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| T |
16017181 |
ggtatatcaggcgcacgttgttgctcagactcgaaactcggttggaaggaagattcaaattctaaattttctttgagaagattttgagcttgagcatgga |
16017082 |
T |
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| Q |
118 |
tcactttcaaggtttcgctgccaggaatctctggtggcaaattttcagtcacttcgctcaactaaacaacagaaaatgtagaagcaagtttagctattta |
217 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16017081 |
tcactttcaaggtttcactgccgggaatctctggtggcaacttttcagtcacttcgctcaactaaacaacagcaaatgtagaagcaagtttagctattta |
16016982 |
T |
|
| Q |
218 |
gtatcacctacccgaaattgttcttaataatctttt-atttcacatcaggttcaagtattaagatatttcatacaataaatctttggttcaagtgttaag |
316 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16016981 |
gtatcaccaacccgaaattgttcttaataatcttttcatttcacatcaggttcaagtattaagatatttcatacaataagtctttggttcaagtgttaag |
16016882 |
T |
|
| Q |
317 |
ctatttcattcaactaaaaacaatgaaggttcgtctgtcttcagagtaataattagtcaagacattgtttcaagcaagcaagaattttatttgaaatagc |
416 |
Q |
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||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16016881 |
ctatttccttcaactaaaaacaataaaggtttgtcagtcttcagagtaataattagtcaagacattgtttcaagcaagcaagaattttatttgaaatggc |
16016782 |
T |
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| Q |
417 |
taagttcaatcatgatgtcaaaatatagaaacaaaatacctcttctgttatagacttgatgaattcctttgcttctc |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16016781 |
taagttcaatcatgatgtcaaaatatagaaacaaaatacctcttctgttatagacttgatgaattcctttgcttctc |
16016705 |
T |
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