View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_high_9 (Length: 383)
Name: NF14586_high_9
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 80 - 370
Target Start/End: Complemental strand, 12131805 - 12131515
Alignment:
| Q |
80 |
aaagagataaagcatgtttggtttggtcttttatgtaacaaattttcaaacatctataagttggatagatgccagttgcttacaaataagagtttaagct |
179 |
Q |
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| T |
12131805 |
aaagagataaagcatgtttggtttggtcttttatgtaacaaattttcaaacatctataagttggatagatgccagttgcttacaaataagagtttaagct |
12131706 |
T |
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| Q |
180 |
tttaatattggattgacaattctctgtttgtttgttaatggcagcctgatgtggttgtcaattgtgctgccatctcggtgcctcgtgcttgtgaaaatga |
279 |
Q |
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| T |
12131705 |
tttaatattggattgacaattctctgtttgtttgttaatggcagcctgatgtggttgtcaattgtgctgccatctcggtgcctcgtgcttgtgaaaatga |
12131606 |
T |
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| Q |
280 |
tcctgatactgcaaatgctattaatgtgccgtcatcccttgtaaaatggttgcaaagctttaaacagaacagtactcttctcattcatctc |
370 |
Q |
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| T |
12131605 |
tcctgatactgcaaatgctattaatgtgccgtcatccctcgtaaaatggttgcaaagctttaaacagaacagtactcttctcattcatctc |
12131515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 12131935 - 12131856
Alignment:
| Q |
1 |
agttcgtgtttatataagaaaaaggctgttatctcctttacctctcaatttgatagtcactcattattcttgctatacca |
80 |
Q |
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| T |
12131935 |
agttcgtgtttatataagaaaaaggctgttatctcctttacctctcaatttgatagtcactcattattcttgctatacca |
12131856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 359
Target Start/End: Complemental strand, 24403745 - 24403622
Alignment:
| Q |
237 |
tcaattgtgctgccatctcggtgcctcgtgcttgtgaaaatgatcctgatactgcaaatgctattaatgtgccgtcatc---ccttgtaaaatggttgca |
333 |
Q |
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| T |
24403745 |
tcaattgtgctgccat-tctgttcctcatgcttgtgaaatcgatcc-gatactacacatgctatcgatgtaccatcatcgtcccttgtaaaatggctgca |
24403648 |
T |
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| Q |
334 |
aagctttaaacagaacagtactcttc |
359 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
24403647 |
aagccttaaacagaacagtactcttc |
24403622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 14694428 - 14694393
Alignment:
| Q |
45 |
tcaatttgatagtcactcattattcttgctatacca |
80 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
14694428 |
tcaacttgatagtcactcattattcttgctatacca |
14694393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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