View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_10 (Length: 438)
Name: NF14586_low_10
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Complemental strand, 6539344 - 6538935
Alignment:
| Q |
7 |
tcgaagaatatataatagcaatcaatggtaaccaataaacataaaatacataacataaatggaaatgagcatgtaggttgcagttaagaaattgaagaat |
106 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6539344 |
tcgaagaatatataatagcaatcaatggtaaccaacaaacataaaatacataacataaatggaaatgagcatgtaggttgcagttaagaaattgaagaat |
6539245 |
T |
|
| Q |
107 |
ccagtggatgggttcttcataaaacataaggtacataatacaaatggaaattaacttaacagttgcagttaggatgtatttttcataaaccatggggcgt |
206 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6539244 |
ccattggatgggttcttcataaaacataaggtacataatacaaatggaaattaacttaacagttgcagttaggatgtatttttcataaaccatggggcgt |
6539145 |
T |
|
| Q |
207 |
aacatagcatctatattactacatagattctactattaactattaagaagaacaaggtgatatcaaactctcttggtagacttccggaatcatccaatta |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6539144 |
aacatagcatctatattactacatagattctactattaactattaagaataaca----gatatcaaactctcttggtagacttccggaatcatccaatta |
6539049 |
T |
|
| Q |
307 |
tggcgggggcacattggaattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgatcatcct |
406 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6539048 |
tggcaggggcgcattggaattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgattatcct |
6538949 |
T |
|
| Q |
407 |
cataaacataaagt |
420 |
Q |
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|||||||||||||| |
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| T |
6538948 |
cataaacataaagt |
6538935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 131 - 420
Target Start/End: Original strand, 7174031 - 7174323
Alignment:
| Q |
131 |
cataaggtacataatacaaatggaaattaacttaacagttgcagttaggatgtatttttcataaacc-------------atggggcgtaacatagcatc |
217 |
Q |
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|||||||||||||| | |||||||||||||||||| ||||||| ||| ||||| || |||||||||| ||| ||| ||| ||| |||| |
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| T |
7174031 |
cataaggtacataacataaatggaaattaacttaa-agttgcaattatgatgtgttgttcataaacctcatgtcatgcacatgtggcataagataacatc |
7174129 |
T |
|
| Q |
218 |
tatattactacatagattctactattaactattaagaagaacaaggtgatatcaaactctcttggtagacttccggaatcatccaattatggcgggggca |
317 |
Q |
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||||||||||||||||||||| ||||||||| | || | |||||||||||||||||||||||| ||||||||||||||||||||| | |||| |
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| T |
7174130 |
tatattactacatagattctattattaactactcagca---caaggtgatatcaaactctcttggcagacttccggaatcatccaatcacggcgtc---- |
7174222 |
T |
|
| Q |
318 |
cattggaattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgatcatcctcataaacataa |
417 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||| |||||||| ||||||||||||||||||||| |
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| T |
7174223 |
--tttgaattttaagagtcttaaaagtaccatctctagaattgtaaacaaccaacttcatcatatactctagcagcacttgatcatcctcataaacataa |
7174320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 325 - 418
Target Start/End: Original strand, 7199833 - 7199926
Alignment:
| Q |
325 |
attttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgatcatcctcataaacataaa |
418 |
Q |
| |
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|||| |||| ||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||| |
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| T |
7199833 |
atttcaagactcttaaaagtaccatccctagaattgtaaagaaccaactttgactgacactctagcagcacttgatcatcctcataaacataaa |
7199926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 420
Target Start/End: Original strand, 7160617 - 7160701
Alignment:
| Q |
336 |
cttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgatcatcctcataaacataaagt |
420 |
Q |
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||||||||||||||| || ||||||||||||||||||| ||| | | || || ||||| |||||||||||| ||||||||||| |
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| T |
7160617 |
cttaaaagtaccatctctataattgtaaacaaccaacttggacgtcatatcaagtagcacttgatcatcctcagaaacataaagt |
7160701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 11237963 - 11237918
Alignment:
| Q |
245 |
actattaagaagaacaaggtgatatcaaactctcttggtagacttc |
290 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
11237963 |
actattattaagaacatggtgatatcaaactctcttggtagacttc |
11237918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Original strand, 7156043 - 7156080
Alignment:
| Q |
336 |
cttaaaagtaccatccgtagaattgtaaacaaccaact |
373 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||| |
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| T |
7156043 |
cttaaaagtaccatctgttgaattgtaaacaaccaact |
7156080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 7199768 - 7199817
Alignment:
| Q |
254 |
aagaacaaggtgatatcaaactctcttggtagacttccggaatcatccaa |
303 |
Q |
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|||||||| ||||||||||||||| ||||||||||| |||| ||||||| |
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| T |
7199768 |
aagaacaaagtgatatcaaactctgttggtagacttgtggaaccatccaa |
7199817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 24723536 - 24723488
Alignment:
| Q |
324 |
aattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaac |
372 |
Q |
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|||||||||| |||||||||| ||||| |||||||||||||||||||| |
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| T |
24723536 |
aattttaagactcttaaaagttccatctctagaattgtaaacaaccaac |
24723488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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