View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_11 (Length: 432)
Name: NF14586_low_11
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 4145784 - 4145367
Alignment:
| Q |
1 |
atgtttagaatcaagaagagttttaacttggatctcataatgaggaattttatagcggaacgaatgtttaagtgttgttgtgggaatgaattatggttct |
100 |
Q |
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| T |
4145784 |
atgtttagaatcaagaagagttttaacttggatctcataatgaggaattttatagcggaacgaatgtttaagtgttgttgtgggaatgaattatggttct |
4145685 |
T |
|
| Q |
101 |
ataggaatgattatgagaaaacaattttgaaccattaagaatctnnnnnnnnnnnnnncagtgtgcatgattcaaaatacattagtaggttgattcgaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145684 |
ataggaatgattatgagaaaacaattttgaaccattaagaatctaaaaaaaaaaaaa-cagtgtgcatgattcaaaatacattagtaggttgattcgaat |
4145586 |
T |
|
| Q |
201 |
ccnnnnnnnnactaaattgtttcgaaccacaactccctaaatcgacattcaagattcaagattacttaggtattcgaatcaattaggtaagttgatttga |
300 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145585 |
ccttttttttactaaattgtttcgaaccacaactccctaaatcgacattcaagattcaagattacttaggtattcgaatcaattaggtaagttgatttga |
4145486 |
T |
|
| Q |
301 |
atcacaactttctagctgaaatcatggaacaaaaatcttaggtga----ttcaaatcacctttaagcaagatttgaatcaacattttttaccaagttgat |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4145485 |
atcacaactttctagctgaaatcatggaacaaaaatcttaggtgattcattcaaatcacctttaagcatgatttgaatcaacattttttaccaagttgat |
4145386 |
T |
|
| Q |
397 |
ttttgaatcaccttattag |
415 |
Q |
| |
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||||||||||||||||||| |
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| T |
4145385 |
ttttgaatcaccttattag |
4145367 |
T |
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