View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14586_low_12 (Length: 389)

Name: NF14586_low_12
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14586_low_12
NF14586_low_12
[»] chr2 (6 HSPs)
chr2 (2-375)||(44148706-44149096)
chr2 (237-358)||(11759790-11759909)
chr2 (225-288)||(6767778-6767841)
chr2 (220-275)||(45000422-45000477)
chr2 (248-288)||(34433318-34433358)
chr2 (248-288)||(42089540-42089580)
[»] chr7 (2 HSPs)
chr7 (237-363)||(40491608-40491732)
chr7 (248-363)||(45557395-45557508)
[»] chr4 (4 HSPs)
chr4 (237-311)||(22250306-22250380)
chr4 (225-288)||(38740293-38740356)
chr4 (225-267)||(44952880-44952922)
chr4 (225-265)||(49979816-49979856)
[»] chr5 (1 HSPs)
chr5 (225-281)||(29923010-29923066)
[»] chr8 (3 HSPs)
chr8 (240-311)||(10368045-10368116)
chr8 (239-268)||(7601884-7601913)
chr8 (225-265)||(28588910-28588950)
[»] chr6 (3 HSPs)
chr6 (237-363)||(31305778-31305902)
chr6 (237-311)||(1499980-1500054)
chr6 (320-366)||(30926790-30926836)
[»] chr1 (3 HSPs)
chr1 (237-335)||(11817248-11817344)
chr1 (234-363)||(7524143-7524270)
chr1 (254-358)||(48548962-48549062)
[»] chr3 (5 HSPs)
chr3 (225-275)||(30958153-30958203)
chr3 (225-275)||(30973965-30974015)
chr3 (239-288)||(1441340-1441389)
chr3 (248-288)||(31084254-31084294)
chr3 (331-363)||(42648464-42648496)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 2 - 375
Target Start/End: Complemental strand, 44149096 - 44148706
Alignment:
Q  2 gagatgaacaagaagataagctacgatcagttgcatttggatttcggtcaatctgatttcctcttacgcccgtgttctatttgcggtgttc-----actc 96  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     ||||    
T  44149096 gagaagaacaagaagataagctacgatcagttgcatttggatttcgttcaatctgatttcctcttacgcccgtgttctatttgcggtgttcggttcactc 44148997  T
Q  97 ctggaaatgtagaagacgagaaattgcacgcgcagtttcacaaacgttttacacaaggaatccaatttagggtatctaatttaattttccactttcataa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44148996 ctggaaatgtagaagacgagaaattgcacgcgcagtttcacaaacgttttacacaaggaatccaatttagggtatctcatttaattttccactttcataa 44148897  T
Q  197 tctccattatttgattcctatgttttgtttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattt-- 294  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  44148896 tctccattatttgattcctacgttttgtttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttg 44148797  T
Q  295 ----------tgatacatttatgtaaacgtttgagttgaactatatatttgattttaaaaatcaattctagaataaaaaactttatgtttg 375  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44148796 attttgattttgatacatttatgtaaacgtttgagttgaactatatatttgattttaaaaatcaattctataataaaaaactttatgtttg 44148706  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 358
Target Start/End: Original strand, 11759790 - 11759909
Alignment:
Q  237 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaacgtttgagttgaactatatatttga 336  Q
    ||||||||||||||||||||||| |||||||| |||||| || ||||| |||   |||  ||||| |||||||| ||  ||| |||||||||| |||||     
T  11759790 tgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgtttgtatacacttatgtaagcg--tgatttgaactataaatttgt 11759887  T
Q  337 ttttaaaaatcaattctagaat 358  Q
     | |||||||||||||||||||    
T  11759888 atgtaaaaatcaattctagaat 11759909  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 6767841 - 6767778
Alignment:
Q  225 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattt 288  Q
    ||||||||||||||||||||||||||||||| ||| ||||| || |||||| || || ||||||    
T  6767841 ttttgaataaactgattttgtaaaattgattgtgattaaaaatgagttgaatgtaaagtgattt 6767778  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 275
Target Start/End: Original strand, 45000422 - 45000477
Alignment:
Q  220 tttgtttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaa 275  Q
    |||| ||||||||||| ||||| |||||||||||||||  ||||||||| ||||||    
T  45000422 tttgattttgaataaattgattatgtaaaattgattttacctaaaagtgagttgaa 45000477  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 34433318 - 34433358
Alignment:
Q  248 aattgattttgactaaaagtgtgttgaacgtgaattgattt 288  Q
    |||||||||||| |||||||| |||||| ||||||||||||    
T  34433318 aattgattttgattaaaagtgagttgaatgtgaattgattt 34433358  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 42089540 - 42089580
Alignment:
Q  248 aattgattttgactaaaagtgtgttgaacgtgaattgattt 288  Q
    |||||||||||| |||||||| |||||| ||||||||||||    
T  42089540 aattgattttgattaaaagtgagttgaatgtgaattgattt 42089580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 363
Target Start/End: Complemental strand, 40491732 - 40491608
Alignment:
Q  237 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaacgtttgagttgaactatatatttga 336  Q
    ||||| |||||||||||||||||||||||||| |||||| || || ||||||   ||| |||||||| ||||||| |  |||||| |||| || |||||     
T  40491732 tgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaag--tgagttaaactttaaatttgt 40491635  T
Q  337 ttttaaaaatcaattctagaataaaaa 363  Q
     | ||||| ||||||||||||| ||||    
T  40491634 gtgtaaaagtcaattctagaatcaaaa 40491608  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 45557508 - 45557395
Alignment:
Q  248 aattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaacgtttgagttgaactatatatttgattttaaaaatc 347  Q
    |||||||| |||||||||||| |||||| || || ||||||   ||| |||||||| ||||||| |  |||||||| ||| | |||||  | ||||||||    
T  45557508 aattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaag--tgagttgagctacaaatttgtgtgtaaaaatc 45557411  T
Q  348 aattctagaataaaaa 363  Q
    ||| ||||||| ||||    
T  45557410 aatcctagaattaaaa 45557395  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 22250380 - 22250306
Alignment:
Q  237 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaa 311  Q
    ||||| ||||||||||||| |||||||||| | |||||| ||||| ||||||  |||| |||||||| |||||||    
T  22250380 tgattctgtaaaattgattatgactaaaagcgagttgaatgtgaagtgatttacatttggatacattcatgtaaa 22250306  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 38740293 - 38740356
Alignment:
Q  225 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattt 288  Q
    |||||||| || ||||||||||||||||||||||  |||||||| ||||||  |||| ||||||    
T  38740293 ttttgaatgaattgattttgtaaaattgattttggataaaagtgagttgaagttgaagtgattt 38740356  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 44952922 - 44952880
Alignment:
Q  225 ttttgaataaactgattttgtaaaattgattttgactaaaagt 267  Q
    ||||||||||| ||||||| ||||||||||| |||||||||||    
T  44952922 ttttgaataaattgattttataaaattgattatgactaaaagt 44952880  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 49979856 - 49979816
Alignment:
Q  225 ttttgaataaactgattttgtaaaattgattttgactaaaa 265  Q
    ||||||||||| | ||| |||||||||||||||||||||||    
T  49979856 ttttgaataaattaattatgtaaaattgattttgactaaaa 49979816  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 29923066 - 29923010
Alignment:
Q  225 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaa 281  Q
    |||||||| || ||||| |||||||||||||||||||| ||||| |||||| |||||    
T  29923066 ttttgaatgaattgattatgtaaaattgattttgactataagtgagttgaatgtgaa 29923010  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 10368116 - 10368045
Alignment:
Q  240 ttttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaa 311  Q
    |||||||||||||||||||| |||||||| |||||| || || ||||||   ||| |||||||| |||||||    
T  10368116 ttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtttagatacattcatgtaaa 10368045  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 268
Target Start/End: Original strand, 7601884 - 7601913
Alignment:
Q  239 attttgtaaaattgattttgactaaaagtg 268  Q
    ||||||||||||||||||||||||||||||    
T  7601884 attttgtaaaattgattttgactaaaagtg 7601913  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 28588910 - 28588950
Alignment:
Q  225 ttttgaataaactgattttgtaaaattgattttgactaaaa 265  Q
    ||||||||||| ||||||| ||| |||||||||||||||||    
T  28588910 ttttgaataaattgattttataagattgattttgactaaaa 28588950  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 363
Target Start/End: Original strand, 31305778 - 31305902
Alignment:
Q  237 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaacgtttgagttgaactatatatttga 336  Q
    |||||||||||||||||||  ||||||||| |||||||| || || | ||||   ||| |||| ||| ||||||| |  |||||||| | ||| ||||||    
T  31305778 tgattttgtaaaattgattccgactaaaagggtgttgaaggtaaaatcatttatgtttggatatattaatgtaaaag--tgagttgatcaataaatttga 31305875  T
Q  337 ttttaaaaatcaattctagaataaaaa 363  Q
     | || |||||||||||||||| ||||    
T  31305876 gtgtataaatcaattctagaatcaaaa 31305902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 1500054 - 1499980
Alignment:
Q  237 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaa 311  Q
    |||||||||||||||||||||| ||||||| | |||||  || |||||||||   |||  |||||||||||||||    
T  1500054 tgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaatacatttatgtaaa 1499980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 30926790 - 30926836
Alignment:
Q  320 ttgaactatatatttgattttaaaaatcaattctagaataaaaaact 366  Q
    |||||| ||| |||||| | |||||||||||||||||||||||||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaataaaaaact 30926836  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 335
Target Start/End: Original strand, 11817248 - 11817344
Alignment:
Q  237 tgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaacgtttgagttgaactatatatttg 335  Q
    ||||||||||||||||||| | |||||||| | ||||||  | || ||||||| ||||  ||||||| ||||||| |||  |||||||||||| |||||    
T  11817248 tgattttgtaaaattgattctaactaaaagcgagttgaagataaaatgatttttatttgaatacattaatgtaaaagtt--agttgaactataaatttg 11817344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 363
Target Start/End: Complemental strand, 7524270 - 7524143
Alignment:
Q  234 aactgattttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaacgtttgagttgaactatatatt 333  Q
    |||||||| | ||||||||||| | |||||||||| | | || || || ||||||   ||| || ||||||||||||| ||  ||||||||||||| |||    
T  7524270 aactgattctataaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagt--gagttgaactataaatt 7524173  T
Q  334 tgattttaaaaatcaattctagaataaaaa 363  Q
    ||  | ||||||||||||||| ||| ||||    
T  7524172 tgtgtgtaaaaatcaattctataatcaaaa 7524143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 48548962 - 48549062
Alignment:
Q  254 ttttgactaaaagtgtgttgaacgtgaattgattttgattttgatacatttatgtaaacgtttgagttgaactatatatttgattttaaaaatcaattct 353  Q
    |||||||| ||| || |||||| || || ||||||   |||||||||||||||||||| |  |||||||||| ||| |  ||| ||||||||||||||||    
T  48548962 ttttgactcaaattgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaag--tgagttgaacaataaa--tgagtttaaaaatcaattct 48549057  T
Q  354 agaat 358  Q
    |||||    
T  48549058 agaat 48549062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 30958203 - 30958153
Alignment:
Q  225 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaa 275  Q
    |||||||| || |||||||||||||||||||||| ||||| ||| ||||||    
T  30958203 ttttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaa 30958153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 30974015 - 30973965
Alignment:
Q  225 ttttgaataaactgattttgtaaaattgattttgactaaaagtgtgttgaa 275  Q
    |||||||| || |||||||||||||||||||||| ||||| ||| ||||||    
T  30974015 ttttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaa 30973965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 1441340 - 1441389
Alignment:
Q  239 attttgtaaaattgattttgactaaaagtgtgttgaacgtgaattgattt 288  Q
    ||||||||||||||||| || ||||||||| ||||||||| || ||||||    
T  1441340 attttgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgattt 1441389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 31084294 - 31084254
Alignment:
Q  248 aattgattttgactaaaagtgtgttgaacgtgaattgattt 288  Q
    |||||||||||| |||||||| |||||| ||||||||||||    
T  31084294 aattgattttgattaaaagtgagttgaatgtgaattgattt 31084254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 42648496 - 42648464
Alignment:
Q  331 atttgattttaaaaatcaattctagaataaaaa 363  Q
    |||||||| ||||||||||||||||||||||||    
T  42648496 atttgattgtaaaaatcaattctagaataaaaa 42648464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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