View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14586_low_18 (Length: 320)
Name: NF14586_low_18
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 11782900 - 11783074
Alignment:
| Q |
1 |
tatatcaatatttgtccctttgctgccgttttttaagtttaaaaacaatcacaacgaaacttccaatataaattttaattatttttagttagacttttta |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11782900 |
tatattaatatttgtccctttgctgccgttttttaagtttaa-------------gaaacttccaatataaattttaattatttttagttagacttttta |
11782986 |
T |
|
| Q |
101 |
cacaattcttagatcatttgcttggggatgaagttaatgaatagttacatgtattaaagnnnnnnntgcaaacctcatgcttcccatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11782987 |
cacaattcttagatcatttgcttggggatgaagttaatgaatagttacatgtattaaagaaaaaaatgcaaacctcatgcttcccatg |
11783074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 11777080 - 11777201
Alignment:
| Q |
38 |
tttaaaaacaatcacaacgaaacttccaatataaattttaattatttttagttagactttttacacaattcttagatcatttgcttggggatgaagttaa |
137 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
11777080 |
tttaaaaacaatcacaacagaatttccaatataaattttaattattcttagttagactttttacacaattcttagatcatttgcttgggggtgaagataa |
11777179 |
T |
|
| Q |
138 |
tgaatagttacatgtattaaag |
159 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
11777180 |
tggatagttacatgtattaaag |
11777201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 11783155 - 11783232
Alignment:
| Q |
237 |
atccaaagagtattctgagaaattaacttagatggcaagcgaaaaattcaattttggtttcctaattttcttcctatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11783155 |
atccgaagagtattctgagaaattaacttagatggcaagcgaaaaattcaattttggtttcctaattttcttcctatg |
11783232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 11777279 - 11777356
Alignment:
| Q |
237 |
atccaaagagtattctgagaaattaacttagatggcaagcgaaaaattcaattttggtttcctaattttcttcctatg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
11777279 |
atccaaagagtattctgagaaattaacttagatggcaagcaaaaaaatcaatttttgtttcgtaattttcttcctatg |
11777356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 11769899 - 11769962
Alignment:
| Q |
246 |
gtattctgagaaattaacttagatggcaagcgaaaaattcaattttggtttcctaattttcttc |
309 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| | ||||||| |||| ||||||||||||||||| |
|
|
| T |
11769899 |
gtattctgagaaatcaacatagatggcaagcaataaattcagtttttgtttcctaattttcttc |
11769962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University