View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14586_low_2 (Length: 695)

Name: NF14586_low_2
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14586_low_2
NF14586_low_2
[»] chr8 (1 HSPs)
chr8 (31-678)||(25839382-25840029)


Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 31 - 678
Target Start/End: Original strand, 25839382 - 25840029
Alignment:
Q  31 ttatatttatactctatacaaatacggagaactaaaaatcctttgtgagaagnnnnnnnnnccatgttaatgagaatatgagttcggtttatggatggag 130  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  25839382 ttatatttatactttatataaatacggagaactaaaaatcctttgtgagaaagaaaaaaaaccatgttaatgagaatatgagttcggtttatggatggag 25839481  T
Q  131 caatttttaatcagattttacttatatctaggttgaattccgaattattagagatctttctttcgataacaccatggttaacaaaaatacatttggaaat 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25839482 caatttttaatcagattttacttatatctaggttgaattccgaattattagagatctttctttcgataaccccatggttaacaaaaatacatttggaaat 25839581  T
Q  231 gatttgattgagaattaatgtaccaaattgatgaaaatggttcttatctttgatgtaattatagttaattttctttaaatttatacattttctttttgca 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25839582 gatttgattgagaattaatgtaccaaattgatgaaaatggttcttatctttgatgtaattatagttaattttctttaaatttatacattttctttttgca 25839681  T
Q  331 agcatgttattactagcaagtgtatattcgtatggtgattctgtattgatctcatcaaagattttatttggacaatctttattgaagtcttccatttgaa 430  Q
    | ||||||||||||| ||||||| ||||||| | ||  ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  25839682 aacatgttattactatcaagtgtctattcgttttgtacttctgtattaatctcatcaaagaatttatttggaccatctttattgaagtcttccatttgaa 25839781  T
Q  431 taatatttttctatcctcgagactatactataatattggtaaaaggttgaaacatatgtttgttgttgatttggattcaaattgagtttattgatcacta 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25839782 taatatttttctatcctcgagactatactataatattggtaaaaggttgaaacatatgtttgttgttgatttggattcaaattgagtttattgatcacta 25839881  T
Q  531 tgttacacataaataaaattcgtggtaaaaattttggtgcatgtttgaattgtgatagttttgatcaagaggaggcacttaagtcgtgttgtcatgtgtt 630  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  25839882 tgttacacataaataaaattcgtggtaaaaattttggtgcatgtttgaattctgatagttttgatcaagaggaggcacttaagtcgtgctgtcatgtgtt 25839981  T
Q  631 tgtttaagaggtgttactattagacactgagttgcttcttcgtgtggt 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25839982 tgtttaagaggtgttactattagacactgagttgcttcttcgtgtggt 25840029  T

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