View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_20 (Length: 307)
Name: NF14586_low_20
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 304
Target Start/End: Original strand, 30361061 - 30361359
Alignment:
| Q |
3 |
ctttcttcctgttccctttgcatttcttcctcatgtcttaatagactctccaattgaaatggctttggttttgtgcagtgttttggttctggctttggtg |
102 |
Q |
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| T |
30361061 |
ctttcttcttgttccctttgcatttcttcctcatgtctcactagactctccaattgaaaaggctctggttttgtgcattgtttgggttctggctttggtg |
30361160 |
T |
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| Q |
103 |
ggatctgcaaattatcagtagatttaataataatgtcgtaaaaaattgaagtagattatgaaccaccaaaatgaacactttagtaccacgggacagtcgg |
202 |
Q |
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| T |
30361161 |
ggatctgcaaattatcggtaggtttaataataatgttgtaaaaaat---agtatattatgaaccaccaaaatgaacacttttgtaccacgggatagtcgg |
30361257 |
T |
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| Q |
203 |
tggtataggggtatggattagcttttggaacccttgttgcttcctcttccaattatttctgcaaaagttccatgtacagtttcctctctttctctgctcc |
302 |
Q |
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| T |
30361258 |
tggtataggggtatgggttagcctttggaacccttgttgcttcctcttccaattctttttgcaaaagttccatgtacagtttcttttctttctcagctcc |
30361357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 19916457 - 19916701
Alignment:
| Q |
3 |
ctttcttcctgttccctttgcatttcttcctcatgtcttaatagactctccaattgaaatggctttggttttgtgcagtgttttggttctggcttt-ggt |
101 |
Q |
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| T |
19916457 |
ctttcttcttgttccctttgcatttcttccttatgtcttaatagactctccaattgaaatggctctggttttgtgcggtgtttgggttctggcttttggt |
19916556 |
T |
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| Q |
102 |
gggatctgcaaattatcagtagatttaataataatgtcgtaaaaaattgaagtagattatgaaccaccaaaatgaacactttagtaccacgggacagtcg |
201 |
Q |
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| T |
19916557 |
gggatctgcaaattatcagtagatttaataataatgtcataaaaaattgaagcagattatgaaccaccaaaatgaacactttagtaccacgggatagtcg |
19916656 |
T |
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| Q |
202 |
gtggtataggggtatggattagcttttggaacccttgttgcttcc |
246 |
Q |
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| T |
19916657 |
gtggtataggggtataggttagcttttggaacccttgttgcttcc |
19916701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 24465902 - 24465655
Alignment:
| Q |
23 |
catttcttcctcatgtcttaatagactctccaattgaaatggctttggttttgtgcagtgttttggttctggctttggtgggatctgcaaattatcagta |
122 |
Q |
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| T |
24465902 |
catttcttccttatgtcttattagactctgcaattgaaatccctcaggttttgtgcagtgtttgggttctggctttggtgggatctgcaaattatcagta |
24465803 |
T |
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| Q |
123 |
gatttaataataatgtcgtaaaaaattgaagtagattatgaaccaccaaaatgaacactttagtaccacgggacagtcggtggtataggggtatggatta |
222 |
Q |
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| T |
24465802 |
gatttaataataatgtcgtaaaaaattgaactagattatgaaccaccaaaataaacacttttgtaccacgacatagtccgtggtgcaggggattgggtta |
24465703 |
T |
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| Q |
223 |
gcttttggaacccttgttgcttcctcttccaattatttctgcaaaagt |
270 |
Q |
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| T |
24465702 |
gcctttggaagccgtgctgcttcctcttccaattctttctgcaaaagt |
24465655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 24466000 - 24466236
Alignment:
| Q |
12 |
tgttccctttgcatttcttcctcatgtcttaatagactctccaattgaaatggctttggttttgtgcagtgttttggttctggctttggtgggatctgca |
111 |
Q |
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| T |
24466000 |
tgttccctttgcatttcttcctcatgtcttactagactctgcaattgaaatccctcaggttttgtgcagtgtttgggttctggcttt--------ctgca |
24466091 |
T |
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| Q |
112 |
aattatcagtagatttaataataatgtcgtaaaaaattgaagtagattatgaaccaccaaaatgaacactttagtaccacgggacagtcggtggtatagg |
211 |
Q |
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| T |
24466092 |
aattatcaatagatttaataataatgtcgtaaaaaattgaactagattatgaaccaccaaaataaacacttttgtaccacgagatagtcgatggtgcagg |
24466191 |
T |
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| Q |
212 |
ggtatggattagcttttggaacccttgttgcttcctcttccaatt |
256 |
Q |
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| T |
24466192 |
ggattgggttagcctttggaacccgtgctgcttcctcttccaatt |
24466236 |
T |
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