View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_21 (Length: 305)
Name: NF14586_low_21
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 54817457 - 54817733
Alignment:
| Q |
10 |
tgaaaaagtaaaacacatacccaaagataattcctgctaggttgtccaataagagcataatgataatcatgatcaaggtgcaaaacccaataatccccag |
109 |
Q |
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| T |
54817457 |
tgaaaaagtaaaacacatacccaaagataattcctgctaggttgtccaataagagcataatgataatcatgatcaaggtgcaaaacccaataatccccag |
54817556 |
T |
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| Q |
110 |
taacaggaatgataggaagcattggaggaacatagaatttgaccttaagtttagcctgatcactattaggatcagctttataagcagtaccttcaatgta |
209 |
Q |
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| T |
54817557 |
taacaggaatgataggaagcattggaggaacatagaatttgaccttaagtttagcctcatcactattaggatcagctttataagcagtaccttcaatgta |
54817656 |
T |
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| Q |
210 |
acttctttttccaccactccaagtctcattcagaacattcacagttccatcatctctcagagtgtaggttgctcttg |
286 |
Q |
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| T |
54817657 |
acttctttttccaccactccaagtctcattcagaacattcacagttccatcatctctcagagtgtaggttgctcttg |
54817733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 55 - 261
Target Start/End: Original strand, 54820409 - 54820615
Alignment:
| Q |
55 |
ccaataagagcataatgataatcatgatcaaggtgcaaaacccaataatccccagtaacaggaatgataggaagcattggaggaacatagaatttgacct |
154 |
Q |
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| T |
54820409 |
ccaatgagagcatattgataatcttcatcaaggtacaaaatccagtaatctccaacagcaggaataattggcaagaatggaggaacatagaatttgacct |
54820508 |
T |
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| Q |
155 |
taagtttagcctgatcactattaggatcagctttataagcagtaccttcaatgtaacttctttttccaccactccaagtctcattcagaacattcacagt |
254 |
Q |
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| T |
54820509 |
tgagcttagcttcatcacttttggggtcagccttataagcacttccttctatagaggttcttttaccattattccaagtctcattgagaacatgaacagt |
54820608 |
T |
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| Q |
255 |
tccatca |
261 |
Q |
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|||||| |
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| T |
54820609 |
cccatca |
54820615 |
T |
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