View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_25 (Length: 296)
Name: NF14586_low_25
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 45068961 - 45068701
Alignment:
| Q |
17 |
caatattcggaaattcctatgtaattctctttgtgcatactcctgttctatgtctaagaaaataaatgttacaggtggttgtttttattttctgcatgca |
116 |
Q |
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| T |
45068961 |
caatattcggaaattcctatgtaattctctttgtgcatactcctgttctatgtctaagaaaataaatgttacaggtggttgtttttattttctgtatgca |
45068862 |
T |
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| Q |
117 |
tagattaattactgttgtcttatgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgcagagaaccaagtagtattaaat |
216 |
Q |
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| T |
45068861 |
tagattaattactgttgttttatgcaggttatttgtgtgatttctatagttttgatattggtatcactagcagaatgcagagaaccaagtagtattaaat |
45068762 |
T |
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| Q |
217 |
tgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagttttaacagattt |
277 |
Q |
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| T |
45068761 |
tgaacagctttgactaccatgcaatcaattgccgaaaacacaatgcagttttaacagattt |
45068701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 72 - 277
Target Start/End: Complemental strand, 45079666 - 45079462
Alignment:
| Q |
72 |
aagaaaataaatgttacaggtggttgtttttattttctgcatgcatagattaattactgttgtcttatgcaggttatttgtgtgatttctatagttctga |
171 |
Q |
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| T |
45079666 |
aagaatataaacgttacatgtgattatttatattttctgcgtgc-tagacttataaccattgttttgtgcaggttattggtgtgatatctgtagttctga |
45079568 |
T |
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| Q |
172 |
tattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagttttaac |
271 |
Q |
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| T |
45079567 |
tattgggatcactagcagaatgcagagtaccaagtagtattaaattgaacaactttgattatcctgcaatcaattgcagaaaacacagtgcagttttaac |
45079468 |
T |
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| Q |
272 |
agattt |
277 |
Q |
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|||||| |
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| T |
45079467 |
agattt |
45079462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 277
Target Start/End: Complemental strand, 45076476 - 45076338
Alignment:
| Q |
139 |
tgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccctgc |
238 |
Q |
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| T |
45076476 |
tgcaggttattggtgtgatctctgtacttctgatatttggttcattagcagaatgcaaagaaccaagtagtagtaaattgaagaactttgattatccagc |
45076377 |
T |
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| Q |
239 |
aatcaattgccgaaaacacaatgcagttttaacagattt |
277 |
Q |
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| T |
45076376 |
tatcaattgcagaaaacacagtgcagttttgacagattt |
45076338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 45083915 - 45083753
Alignment:
| Q |
115 |
catagattaattactgttgtcttatgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgcagagaaccaagtagtattaa |
214 |
Q |
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| T |
45083915 |
catagatttatcactattgttttgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactagcagaatgcagaataccaagtattagtaa |
45083816 |
T |
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| Q |
215 |
attgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagttttaacagattt |
277 |
Q |
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| T |
45083815 |
attgaataactttgattatccagctatcaattgcagaaaacacagtgcagttttgacagattt |
45083753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 34506321 - 34506189
Alignment:
| Q |
65 |
tatgtctaagaaaataaatgttacaggtggttgtttttattttctgcatgcataga-tta-attactgttgtcttatgcaggttatttgtgtgatttcta |
162 |
Q |
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| T |
34506321 |
tatgtctaagaaaataaacgttacatgtagttatttttattttctgtgtccataaacttatattatcattgttttgtgcaggttatttgtgtgatttcta |
34506222 |
T |
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| Q |
163 |
tagttctgatattggtatcactagcagaatgca |
195 |
Q |
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| T |
34506221 |
tagttttgatatttggatcactagcagaatgca |
34506189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 34506185 - 34506134
Alignment:
| Q |
226 |
ttgactaccctgcaatcaattgccgaaaacacaatgcagttttaacagattt |
277 |
Q |
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| T |
34506185 |
ttgattaccttgcaatcaattgcagaaaacacagtgcagttttgacagattt |
34506134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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