View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14586_low_27 (Length: 274)

Name: NF14586_low_27
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14586_low_27
NF14586_low_27
[»] chr5 (1 HSPs)
chr5 (7-204)||(13480935-13481132)
[»] chr8 (4 HSPs)
chr8 (13-123)||(28437310-28437420)
chr8 (8-103)||(5211202-5211297)
chr8 (23-123)||(9593592-9593692)
chr8 (7-124)||(33823811-33823928)
[»] chr1 (2 HSPs)
chr1 (13-123)||(24878842-24878952)
chr1 (13-123)||(34645977-34646087)
[»] chr4 (2 HSPs)
chr4 (13-124)||(35202317-35202428)
chr4 (14-123)||(22483430-22483539)
[»] chr3 (1 HSPs)
chr3 (14-123)||(41895787-41895896)
[»] chr2 (4 HSPs)
chr2 (13-128)||(39741039-39741154)
chr2 (14-126)||(3945895-3946007)
chr2 (21-104)||(41335310-41335393)
chr2 (70-127)||(3908483-3908540)
[»] chr7 (1 HSPs)
chr7 (74-123)||(8132120-8132169)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 13481132 - 13480935
Alignment:
Q  7 taaagctccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13481132 taaagctccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggt 13481033  T
Q  107 gaatcacatcttggacacttcatgttttgttccggtggttttgttgttgaggtagaagatgatgaagatgttttcttaccaacagaaccttgctggtt 204  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13481032 gagtcacatcttggacacttcatgttttgttctggtggttttgttgttgaggtagaagatgatgaagatgttttcttaccaacagaaccttgctggtt 13480935  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 28437420 - 28437310
Alignment:
Q  13 tccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatca 112  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||| || |  || |||||||||||||| |||||||||||||| || ||||||    
T  28437420 tccaccatttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgtagttgttgtagtaacagaattttgtgtttggagaatca 28437321  T
Q  113 catcttggaca 123  Q
    |||||||||||    
T  28437320 catcttggaca 28437310  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 5211202 - 5211297
Alignment:
Q  8 aaagctccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttg 103  Q
    ||||| ||||||||||||||||||||| ||||  ||||||| ||||| | ||||||||  |   | ||||||||||||||||||||||||||||||    
T  5211202 aaagcaccaccttttgtccaatatcttttacagtttttgcaaaaatggcgtggttgtgagagattgtagttgttgtagtagcagaattttgtgttg 5211297  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 9593592 - 9593692
Alignment:
Q  23 gtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatcacatcttggac 122  Q
    |||||||| ||||||||||| ||||| || | |||||||||||| |  || |||||||| || || || ||||||||||||| |||||  || |||||||    
T  9593592 gtccaataccttctacatgtcttgcaaaagtatcttggttgtgtgagactgtagttgttataataacaaaattttgtgttggttgaattgcaccttggac 9593691  T
Q  123 a 123  Q
    |    
T  9593692 a 9593692  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 33823928 - 33823811
Alignment:
Q  7 taaagctccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggt 106  Q
    |||||| || |||||||||||||| |  |  ||||| ||||||||||| |  || || || | | |||||||||||||||| || ||||||||||| | |    
T  33823928 taaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgat 33823829  T
Q  107 gaatcacatcttggacac 124  Q
    || || ||||||||||||    
T  33823828 gagtcgcatcttggacac 33823811  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 24878952 - 24878842
Alignment:
Q  13 tccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatca 112  Q
    |||||||||||||||||| ||||| |||  |||||| |||| ||||||||| |||||||| ||||| ||||||||||||||||||||||| |  ||| ||    
T  24878952 tccaccttttgtccaataccttctgcatcctttgcaaaaatatcttggttgagttaagctgtagttattgtagtagcagaattttgtgtttgaagaacca 24878853  T
Q  113 catcttggaca 123  Q
    |||||||||||    
T  24878852 catcttggaca 24878842  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 34646087 - 34645977
Alignment:
Q  13 tccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatca 112  Q
    ||||||||  |||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||| || |||||||||||   ||||| |    
T  34646087 tccaccttgagtccaataccttctacatgttttgcagaaatatcttggttgtgtcaaactatagttgttgtagtaacaaaattttgtgttaattgaatta 34645988  T
Q  113 catcttggaca 123  Q
    || ||||||||    
T  34645987 caccttggaca 34645977  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 35202428 - 35202317
Alignment:
Q  13 tccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatca 112  Q
    ||||||| |||||||||||||| |||| | ||||||||| ||||||||||||| ||| |||||||| || ||||| |||||||| ||||| | |||||||    
T  35202428 tccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagtaacagaatttagtgtttgatgaatca 35202329  T
Q  113 catcttggacac 124  Q
    || | |||||||    
T  35202328 caacgtggacac 35202317  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 22483430 - 22483539
Alignment:
Q  14 ccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatcac 113  Q
    |||||||| ||||||||||| ||||| |  |||||||||| |||||||||||  |  || || ||||||||||| || ||||| ||||||  ||| ||||    
T  22483430 ccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaagactgtaattgttgtagtaacaaaatttggtgttgtttgagtcac 22483529  T
Q  114 atcttggaca 123  Q
    ||||||||||    
T  22483530 atcttggaca 22483539  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 41895896 - 41895787
Alignment:
Q  14 ccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatcac 113  Q
    |||||||  |||||||| |||||||| |||||||| || |  ||||||||||  | ||||||||| |||||||| |||||||||||||| | |||||  |    
T  41895896 ccaccttcagtccaataccttctacaggttttgcaaaagtaccttggttgtgagaggctatagttattgtagtaacagaattttgtgttagttgaattgc 41895797  T
Q  114 atcttggaca 123  Q
    | ||||||||    
T  41895796 accttggaca 41895787  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 39741154 - 39741039
Alignment:
Q  13 tccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatca 112  Q
    ||||||||| |||||||| ||||| || | ||||||||||| |||||| || || |  || ||||||||||| || |||||||| ||||||| ||| |      
T  39741154 tccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagtaagactgtagttgttgtaataacagaatttggtgttggttgagttg 39741055  T
Q  113 catcttggacacttca 128  Q
    ||||||||||| ||||    
T  39741054 catcttggacaattca 39741039  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 3945895 - 3946007
Alignment:
Q  14 ccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgaatcac 113  Q
    |||||| |||||||||| | | | || | ||| |||||||||||||||||||  || || |||||||||||||| || || |||||||| | ||| ||||    
T  3945895 ccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgacaaactgtagttgttgtagtaacaaaactttgtgtttgatgagtcac 3945994  T
Q  114 atcttggacactt 126  Q
    | | |||||||||    
T  3945995 aacgtggacactt 3946007  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 41335393 - 41335310
Alignment:
Q  21 ttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgg 104  Q
    |||||||||| |  |||||||| ||||| || ||||||||||| |  ||| |||||||||||||||| || |||||||| ||||    
T  41335393 ttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaattttgtattgg 41335310  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 3908540 - 3908483
Alignment:
Q  70 gctatagttgttgtagtagcagaattttgtgttgggtgaatcacatcttggacacttc 127  Q
    ||||||||||||||| |||||||| || ||||||  ||||||||| || |||||||||    
T  3908540 gctatagttgttgtaatagcagaacttggtgttgaatgaatcacacctaggacacttc 3908483  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 8132120 - 8132169
Alignment:
Q  74 tagttgttgtagtagcagaattttgtgttgggtgaatcacatcttggaca 123  Q
    |||||||||||||||||||| |||||||| | ||| ||||||||||||||    
T  8132120 tagttgttgtagtagcagaactttgtgtttgttgattcacatcttggaca 8132169  T

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