View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14586_low_28 (Length: 262)
Name: NF14586_low_28
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 149901 - 150121
Alignment:
| Q |
22 |
atcatggtcaaaattgtagtaattagattaattaatttactccgtatagcgcatttggaggcagtggtatgaagacttaatatcagtcaacactcattga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
149901 |
atcatggtcaaaattgtagtaattagattaattaatttactccgtatagcgcatttggaggcagtggtatgaagacttaatatcagtcaacactcattga |
150000 |
T |
|
| Q |
122 |
gtcttttagc-aacaataaaagcacacaaccatatatagtatacctgctggtcacaaatattgctcaagtgaagctcactacgattcctatctaccaacc |
220 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
150001 |
gtcttttagcaaacaataaaagcacacaaccatatatagtatac---ctggtcacaaatattgctcaagtgaagctcactacgattcctatctaccaacc |
150097 |
T |
|
| Q |
221 |
aacaggttcaatatctatgttcat |
244 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
150098 |
aacaggttcaaaatctatgttcat |
150121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 244
Target Start/End: Original strand, 157849 - 158015
Alignment:
| Q |
81 |
ggcagtggtatgaagacttaatatcagtcaacactcattgagtcttttagcaacaataaaagcaca-------caaccatatatagtatacctgctggtc |
173 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || || |||| | || ||||| |
|
|
| T |
157849 |
ggcagtggtatgaagacttaacatcagtcaacactcattgagtctttcagcaacaataaaagcacatacattgcacacaagcatagcacac---ctggtg |
157945 |
T |
|
| Q |
174 |
acaaatattgctcaagtgaagctcactacgattcctatctaccaaccaacaggttcaatatctatgttcat |
244 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
157946 |
acaactattgctcaagtgaagctcacta-aattcctatctaccaaccaacaggttcagaatctatgttcat |
158015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 48088005 - 48087972
Alignment:
| Q |
52 |
attaatttactccgtatagcgcatttggaggcag |
85 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
48088005 |
attaatttactccgtatatcgcatttggaggcag |
48087972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University