View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14586_low_29 (Length: 254)

Name: NF14586_low_29
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14586_low_29
NF14586_low_29
[»] chr6 (8 HSPs)
chr6 (37-170)||(15296147-15296280)
chr6 (100-173)||(31665627-31665700)
chr6 (102-173)||(31442516-31442586)
chr6 (102-172)||(20915998-20916067)
chr6 (102-172)||(21762022-21762091)
chr6 (102-169)||(30836482-30836548)
chr6 (102-172)||(826733-826802)
chr6 (126-174)||(26839987-26840035)
[»] chr5 (6 HSPs)
chr5 (39-172)||(37337323-37337456)
chr5 (40-173)||(11300702-11300835)
chr5 (102-173)||(26110687-26110758)
chr5 (85-172)||(23045484-23045571)
chr5 (105-172)||(31981793-31981859)
chr5 (87-171)||(22780046-22780128)
[»] chr8 (6 HSPs)
chr8 (17-172)||(23828343-23828497)
chr8 (100-173)||(42315341-42315414)
chr8 (100-173)||(45244283-45244356)
chr8 (61-175)||(26981032-26981145)
chr8 (103-173)||(7496757-7496827)
chr8 (102-172)||(26083903-26083972)
[»] chr3 (10 HSPs)
chr3 (102-172)||(1529165-1529235)
chr3 (102-173)||(39484809-39484880)
chr3 (102-147)||(37605421-37605466)
chr3 (45-173)||(15291460-15291586)
chr3 (102-173)||(52041385-52041455)
chr3 (102-174)||(1141742-1141813)
chr3 (139-173)||(15996416-15996450)
chr3 (102-172)||(22424371-22424440)
chr3 (139-172)||(48910166-48910199)
chr3 (105-173)||(42655772-42655839)
[»] chr4 (5 HSPs)
chr4 (87-173)||(6898738-6898823)
chr4 (102-172)||(12094856-12094925)
chr4 (102-169)||(9451245-9451311)
chr4 (102-172)||(24257703-24257772)
chr4 (107-172)||(9199512-9199576)
[»] chr2 (8 HSPs)
chr2 (102-172)||(38996521-38996590)
chr2 (170-234)||(32284422-32284486)
chr2 (102-173)||(28926074-28926144)
chr2 (102-173)||(32281485-32281555)
chr2 (103-169)||(21922337-21922402)
chr2 (104-173)||(29280084-29280152)
chr2 (102-173)||(22625388-22625458)
chr2 (102-172)||(38955841-38955910)
[»] chr7 (3 HSPs)
chr7 (173-234)||(12514992-12515053)
chr7 (104-172)||(39742297-39742364)
chr7 (102-172)||(20077343-20077412)
[»] chr1 (7 HSPs)
chr1 (102-175)||(46555499-46555572)
chr1 (102-172)||(15700721-15700790)
chr1 (172-234)||(15703657-15703719)
chr1 (102-172)||(22964007-22964076)
chr1 (122-173)||(44508600-44508651)
chr1 (105-161)||(3908833-3908888)
chr1 (122-172)||(24819183-24819233)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 15296280 - 15296147
Alignment:
Q  37 acttgatttttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttac 136  Q
    |||||||||||||||||| |||  ||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  15296280 acttgatttttcaaggtgaaatgctgattaggaaaaacaccaaggagtaattaaggcataaacattggagggaaaatattaggttaaaaattagggttac 15296181  T
Q  137 ttatagcttgatcaaacaagctttagtaagaaag 170  Q
    |||||||||||  |||||||||||||||||||||    
T  15296180 ttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 31665627 - 31665700
Alignment:
Q  100 attggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  31665627 attggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 31442586 - 31442516
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||||||||||||| |||||||   | || |||||| |||||||||||||||||||||||||    
T  31442586 tggagggaaaatattaggttaaaa-ttagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 20915998 - 20916067
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||||||| ||| |||  | ||| ||||||||| |||||||||||||||||||||    
T  20915998 tggagggaaaatattaggttaaaa-ttaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 21762091 - 21762022
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||||||| |||||||||| ||||||| |   |||||||||||| ||||| |||||||||||||||    
T  21762091 tggagggaaaatagtaggttaaaa-ttagggtgagcaatagcttgatcagacaagttttagtaagaaagat 21762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 30836482 - 30836548
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaa 169  Q
    ||||||||||||||||| |||||| ||||||| |   || ||||||||| ||||||||||||||||||    
T  30836482 tggagggaaaatattagattaaaa-ttagggtgaacaattgcttgatcagacaagctttagtaagaaa 30836548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 826733 - 826802
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||| ||||||| ||| |   ||||||||| || ||||| |||||||||||||||    
T  826733 tggagggaaaatattaggtt-aaaattaaggtgaacaatagcttgaccagacaagttttagtaagaaagat 826802  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 26840035 - 26839987
Alignment:
Q  126 attagggttacttatagcttgatcaaacaagctttagtaagaaagatac 174  Q
    |||||||||| | || |||||||||||||| |||||| |||||||||||    
T  26840035 attagggttaatgatggcttgatcaaacaaactttagaaagaaagatac 26839987  T

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Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 37337456 - 37337323
Alignment:
Q  39 ttgatttttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttactt 138  Q
    ||||||| |||||||| |||  ||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  37337456 ttgatttctcaaggtgaaatgctgattaggaaaaacaccaaggagtaattaaggcataaacattggagggaaaatattaggttaaaaattagggttactt 37337357  T
Q  139 atagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||| ||||||||||||||||||||||||    
T  37337356 atagcttgaccaaacaagctttagtaagaaagat 37337323  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 11300702 - 11300835
Alignment:
Q  40 tgatttttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttactta 139  Q
    ||||||||||||||| |||  ||||||||| ||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  11300702 tgatttttcaaggtgaaatgctgattaggaaaaacatcaaggagtaattaaggcataaacattggagggaaaatattaggttaaaaattagggttactta 11300801  T
Q  140 tagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||| | || ||||| ||||||||||||||||    
T  11300802 tagcttcaccagacaagttttagtaagaaagata 11300835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 23045571 - 23045484
Alignment:
Q  85 aattaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||||| | ||||||||||||||||||||||||| ||| ||| | || ||||||||||||| |||| |||||| |||||||||    
T  23045571 aattaatgcttgagcattggagggaaaatattaggttaagaatcaggttaacatatagcttgatcagacaaactttagaaagaaagat 23045484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 31981859 - 31981793
Alignment:
Q  105 agggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||||||||||||||| ||||| | |   || |||||||||||||||||||||||| ||||||    
T  31981859 agggaaaatattaggttaaaa-ttaggttgaacaattgcttgatcaaacaagctttagtaaaaaagat 31981793  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 22780046 - 22780128
Alignment:
Q  87 ttaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaaga 171  Q
    |||||||| | ||| ||||||||||| |||||||||| | ||||||| |   |||||||||||| ||||||||||| ||||||||    
T  22780046 ttaatgctaacacaatggagggaaaa-attaggttaaga-ttagggtaaacaatagcttgatcagacaagctttagaaagaaaga 22780128  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 23828497 - 23828343
Alignment:
Q  17 tgaaaagttgtgggagggaaacttgatttttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatatt 116  Q
    |||||| | ||| ||||||||||| ||||| |||||||| ||  ||||||||||||||||  |||||||||||| ||| || ||||||||||||||||||    
T  23828497 tgaaaattggtgagagggaaactttatttt-caaggtgccatgctgattaggataaacactaaggagtaattaaggctgaagcattggagggaaaatatt 23828399  T
Q  117 aggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||    
T  23828398 aggttaaaaattagggttactaatagcttgaccaaacaagctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 42315414 - 42315341
Alignment:
Q  100 attggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  42315414 attggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 45244283 - 45244356
Alignment:
Q  100 attggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| || |||| |||||||||||||||||    
T  45244283 attggagggaaaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagata 45244356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 26981145 - 26981032
Alignment:
Q  61 tgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagcttt 160  Q
    ||||||||| ||||||  ||||| | |||||||||  |   |||||| ||||||||||||||||| |||||||    ||| |||||||||||||||||||    
T  26981145 tgattaggaaaaacactaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaa-ttagggtatgatattgcttgatcaaacaagcttt 26981047  T
Q  161 agtaagaaagatact 175  Q
    |||||||||||||||    
T  26981046 agtaagaaagatact 26981032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 7496827 - 7496757
Alignment:
Q  103 ggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||| ||  | ||||| |||||||| |  ||||||||||||||||||||||||||||||||||||    
T  7496827 ggagggaaaaaataggtttaaatattagggtcagctatagcttgatcaaacaagctttagtaagaaagata 7496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 26083972 - 26083903
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||| |||||||||||    ||| |||||| || |||||||||||||||||||||    
T  26083972 tggagggaaaatattaggtt-aaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 26083903  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 1529235 - 1529165
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  1529235 tggagggaaaaaattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 39484809 - 39484880
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggtta-cttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||||||||||||| | ||||| | | |||||||||| |||||||||||||||||||||||||    
T  39484809 tggagggaaaatattaggttaaaact-agggtgaacatatagcttgaccaaacaagctttagtaagaaagata 39484880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 37605421 - 37605466
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttga 147  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||    
T  37605421 tggagggaaaatattaggttaagaattagggttactaatagcttga 37605466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 173
Target Start/End: Complemental strand, 15291586 - 15291460
Alignment:
Q  45 tttcaaggtgcaatcttgattaggataaacacccaggagtaattaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagct 144  Q
    |||||| ||| ||| ||||||||||| | |||  || || | |||||||| | ||| ||||||||||| |||||||||| | ||||||| |   ||||||    
T  15291586 tttcaaagtggaatgttgattaggattagcacttagaaggagttaatgctaatacaatggagggaaaa-attaggttaaga-ttagggtaaacaatagct 15291489  T
Q  145 tgatcaaacaagctttagtaagaaagata 173  Q
    ||| |||||||||||||||||||||||||    
T  15291488 tgaccaaacaagctttagtaagaaagata 15291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 52041385 - 52041455
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||| ||||||||||||||||||| ||||||| |   ||||||||| || ||||||||||||||||||||||    
T  52041385 tggaaggaaaatattaggttaaaa-ttagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 1141813 - 1141742
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagatac 174  Q
    ||||||||||||||||| |||||| |||| || |   || |||||| ||||||||||||||||||||||||||    
T  1141813 tggagggaaaatattagattaaaa-ttagagtgaacaattgcttgaccaaacaagctttagtaagaaagatac 1141742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 15996416 - 15996450
Alignment:
Q  139 atagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||| ||||||||||||||||||||||    
T  15996416 atagcttgatcagacaagctttagtaagaaagata 15996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 22424371 - 22424440
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||| ||||||||||| |   ||||||||| || | || ||||||||||||||||    
T  22424371 tggagggaaaatattaggtt-aaaattagggtgaacaatagcttgaccagataaactttagtaagaaagat 22424440  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 48910166 - 48910199
Alignment:
Q  139 atagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||| |||||||||||||    
T  48910166 atagcttgatcaaacaagctctagtaagaaagat 48910199  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 42655839 - 42655772
Alignment:
Q  105 agggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    ||||||||||||| ||||||| ||||||| |   ||||||||| || ||||||||| ||||||||||||    
T  42655839 agggaaaatattatgttaaaa-ttagggtgaacaatagcttgaccagacaagctttggtaagaaagata 42655772  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 6898738 - 6898823
Alignment:
Q  87 ttaatgcttaaacattggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||| | ||| |||| ||||||||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||||||    
T  6898738 ttaatgctaacacaatggacggaaaatattaggttaaga-ttagggttaccaatagcttgatcaaacaagctttagtaagaaagata 6898823  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||    
T  12094856 tggagggaaaatattaggttaaaa-ttagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 9451311 - 9451245
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaa 169  Q
    |||||||||||||||||||| ||||||||||| |   ||||||||| || ||||||||||||||||||    
T  9451311 tggagggaaaatattaggtt-aaaattagggtgaacaatagcttgaccagacaagctttagtaagaaa 9451245  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 24257772 - 24257703
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||| ||||||||||||||||| ||||||| |   || |||||| ||||||||||||||||||||||||    
T  24257772 tggaggaaaaatattaggttaaaa-ttagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 9199576 - 9199512
Alignment:
Q  107 ggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||||||||||||| |||||||    ||| |||||| || |||||||||||||||||||||    
T  9199576 ggaaaatattaggttaaaa-ttagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 38996521 - 38996590
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||| |||||||||||||||||||||    
T  38996521 tggagggaaaatattaggttaaaa-ttagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 32284486 - 32284422
Alignment:
Q  170 gatactaaactttcgacccgtgcttcgcacgggtcctatcaaccgtatagagatcaataaattat 234  Q
    ||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  32284486 gatactagacttttgacccgtgcatcgcacgggtcctatcaaccgtatagagaccaataaattat 32284422  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 28926144 - 28926074
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  28926144 tggagggaaaa-attaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 32281555 - 32281485
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  32281555 tggagggaaaatactaggttaaaa-ttagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 21922402 - 21922337
Alignment:
Q  103 ggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaa 169  Q
    ||||||||||||||||||||| | ||||||| | |||||||||||||| ||||||||||| ||||||    
T  21922402 ggagggaaaatattaggttaaga-ttagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 29280152 - 29280084
Alignment:
Q  104 gagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||||||||||| ||||||| |   ||||||| |||| ||||| ||||||||||||||||    
T  29280152 gagggaaaatattaggttaaaa-ttagggtgaacaatagcttcatcagacaagttttagtaagaaagata 29280084  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 22625388 - 22625458
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||||||||| |||||||||||  |  || |||||| || ||||| ||||||||||||||||    
T  22625388 tggagggaaaatattaggtt-aaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 38955841 - 38955910
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||| | |||||||||||   |||| ||||||| | ||||||||||||| |||||    
T  38955841 tggagggaaaatattaggtt-agaattagggttatcaatagtttgatcagataagctttagtaagtaagat 38955910  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 12515053 - 12514992
Alignment:
Q  173 actaaactttcgacccgtgcttcgcacgggtcctatcaaccgtatagagatcaataaattat 234  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  12515053 actagactttcgacccgtgcatcgcacgggtcctatcaaccgtatagagatcgataaattat 12514992  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 39742297 - 39742364
Alignment:
Q  104 gagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||| | |||||||||   ||||||||||||||||||||||||||||||||||    
T  39742297 gagggaaaatattaggttaaga-ttagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 20077343 - 20077412
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||||||||||||| |||||||    ||| |||||| ||||||||||||||||||||||||    
T  20077343 tggagggaaaatattaggttaaaa-ttagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 46555572 - 46555499
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagatact 175  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| |  |||||||||||||| |||||||||    
T  46555572 tggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaataaagatact 46555499  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 15700790 - 15700721
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  15700790 tggagggaaaatactaggttaaaa-ttagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 15703719 - 15703657
Alignment:
Q  172 tactaaactttcgacccgtgcttcgcacgggtcctatcaaccgtatagagatcaataaattat 234  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  15703719 tactagacttttgacccgtgcatcgcacgggtcctatcaaccgtatagagaccaataaattat 15703657  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 22964076 - 22964007
Alignment:
Q  102 tggagggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    ||||||||||||||||||||| || ||||||||||  ||||||||| || ||||||||||||||| |||||    
T  22964076 tggagggaaaatattaggttagaa-ttagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 44508651 - 44508600
Alignment:
Q  122 aaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagata 173  Q
    |||||||||||||| | |||||||||||| ||||||||||| ||||||||||    
T  44508651 aaaaattagggttagtaatagcttgatcagacaagctttagaaagaaagata 44508600  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 3908833 - 3908888
Alignment:
Q  105 agggaaaatattaggttaaaaattagggttacttatagcttgatcaaacaagcttta 161  Q
    |||||||||| |||||||||| ||||||||||  |||||||||||| ||||||||||    
T  3908833 agggaaaatagtaggttaaaa-ttagggttaccaatagcttgatcagacaagcttta 3908888  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 24819233 - 24819183
Alignment:
Q  122 aaaaattagggttacttatagcttgatcaaacaagctttagtaagaaagat 172  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||| |||||    
T  24819233 aaaaattagggttagtaatagcttgaccaaacaagctttggtaagtaagat 24819183  T

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