View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_3 (Length: 561)
Name: NF14586_low_3
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 35951694 - 35951145
Alignment:
| Q |
1 |
aatgctatatatgttgcaccattccataagtactattctctctatgtaagggatatgactattttacattatatcatcaatctattagtaccccattcca |
100 |
Q |
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| T |
35951694 |
aatgctatatatgttacaccattccataagtactattctctctatgtaagggatataactattttacattatatcatcaatctattagtaccccattcca |
35951595 |
T |
|
| Q |
101 |
taagtacttttctcaattattgtcgttgtgtataaatttcagctatgtctgtataattactgttcatgttatgccatgatgatgagtagtattgatgaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
35951594 |
taagtacttttctcaattattgtcgttgtgtataaatttcagctatgtctgtataattattgttcatgttatgccatgatgatgagtagtattaatgaac |
35951495 |
T |
|
| Q |
201 |
ttgggttttgtggtgataaaaattgattttaaacaattcattttactttaaaacttagttgaataaattaatttatgtttggataggtttattgagcttg |
300 |
Q |
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| T |
35951494 |
ttgggttttgtggtgataaaaattgattttaaataattcgttttactttaaaacttagttgaataaattaatttatgtttggatacgtttattgagcttg |
35951395 |
T |
|
| Q |
301 |
acaaaaaatccagtgtaaaaatcacattttagactcaaaatctac-aaactagcttcaaattagatttaagaatcaattctgaagataaaatcatttgta |
399 |
Q |
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| T |
35951394 |
acaaaaaatccagtgtaaaagtcacattttagactcaaaatctacaaaactagcttcaaattagatttaggaatcaattctgaagataaaatcatttgta |
35951295 |
T |
|
| Q |
400 |
ttcaagaacaattaaacatgtcaacatcaaatttacaactccagaatcaattttgcttgctataaacgtgaaacaaaagagtaggcttaattaattatat |
499 |
Q |
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| T |
35951294 |
ttcaagaacaattaaacatgtcaacatcaattttacagctccagaatcaattttgcttgctataaacgtgaaacaaaaaagtaggcttaattaattatat |
35951195 |
T |
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| Q |
500 |
taagaccataagtatagcgattcttattcaaataaatttattagtatatt |
549 |
Q |
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| T |
35951194 |
taagaccataagtatagtgattcttattcaaataaatttattagtatatt |
35951145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 2778510 - 2778550
Alignment:
| Q |
413 |
aaacatgtcaacatcaaatttacaactccagaatcaatttt |
453 |
Q |
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| T |
2778510 |
aaacatgtcaacatcaattttacatcttcagaatcaatttt |
2778550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 451
Target Start/End: Complemental strand, 50550592 - 50550516
Alignment:
| Q |
375 |
aattctgaagataaaatcatttgtattcaagaacaattaaacatgtcaacatcaaatttacaactccagaatcaatt |
451 |
Q |
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||||||||||| | ||||| || || |||| |||||||||||||||||| ||||| | |||| |||| |||||||| |
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| T |
50550592 |
aattctgaagacagaatcaattctaatcaacaacaattaaacatgtcaaaatcaactctacacatccaaaatcaatt |
50550516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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