View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_31 (Length: 242)
Name: NF14586_low_31
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12514927 - 12514698
Alignment:
| Q |
1 |
aaaatcatgtgagtctcactactttgagtgtgatctatttctaaagtgtgatactacatggatgaatttcattcaataagagagtgagtgttaaaatgag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||| |
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| T |
12514927 |
aaaaccatgtgagtctcactactttgagtgtgatctatttctaaagtgtgatactacatgaattaatttcattcaataagagagtgggtgttaaaatgag |
12514828 |
T |
|
| Q |
101 |
ggttgtgtcagaataagtgttaaattgagagtgttcataaccctcttctataatttcattgatgttaaataggtgagagnnnnnnntttgtattaccatt |
200 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
12514827 |
tgttgtgtcagagtaagtgttaaattgagagtgtcgataaccctcttctataatttcattgatgttaaataggtgatagaaaaaaatttgtattaccatt |
12514728 |
T |
|
| Q |
201 |
gaaaataatacgataaccactaataatttg |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
12514727 |
gaaaataatacgataaccactaataatttg |
12514698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 32284358 - 32284129
Alignment:
| Q |
1 |
aaaatcatgtgagtctcactactttgagtgtgatctatttctaaagtgtgatactacatggatgaatttcattcaataagagagtgagtgttaaaatgag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |
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| T |
32284358 |
aaaatcatgtaagtctcactactttgagtgtgatctatttctaaagtgtgatactatatggatgaatttcattcaataaaatagtgggtgttaaaatgag |
32284259 |
T |
|
| Q |
101 |
ggttgtgtcagaataagtgttaaattgagagtgttcataaccctcttctataatttcattgatgttaaataggtgagagnnnnnnntttgtattaccatt |
200 |
Q |
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||||||||||| |||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||| || ||| |||||||||| |
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| T |
32284258 |
tgttgtgtcagagtaagtgttaaatagagagtttccataacactcttctataatttcattgatgttaaataggtgatagaaacaaatttatattaccatt |
32284159 |
T |
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| Q |
201 |
gaaaataatacgataaccactaataatttg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
32284158 |
gaaaataatacgataaccactaataatttg |
32284129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 15703593 - 15703364
Alignment:
| Q |
1 |
aaaatcatgtgagtctcactactttgagtgtgatctatttctaaagtgtgatactacatggatgaatttcattcaataagagagtgagtgttaaaatgag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |
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| T |
15703593 |
aaaatcatgtaagtctcactactttgagtgtgatctatttctaaagtgtgatactatatggatgaatttcattcaataaaatagtgggtgttaaaatgag |
15703494 |
T |
|
| Q |
101 |
ggttgtgtcagaataagtgttaaattgagagtgttcataaccctcttctataatttcattgatgttaaataggtgagagnnnnnnntttgtattaccatt |
200 |
Q |
| |
|
||||||||||| |||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||| || ||| |||||||||| |
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| T |
15703493 |
tgttgtgtcagagtaagtgttaaatagagagtttccataacactcttctataatttcattgatgttaaataggtgatagaaacaaatttatattaccatt |
15703394 |
T |
|
| Q |
201 |
gaaaataatacgataaccactaataatttg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
15703393 |
gaaaataatacgataaccactaataatttg |
15703364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 95
Target Start/End: Complemental strand, 36382916 - 36382886
Alignment:
| Q |
65 |
aatttcattcaataagagagtgagtgttaaa |
95 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
36382916 |
aatttcattcaataagagagtgagtgttaaa |
36382886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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