View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_33 (Length: 241)
Name: NF14586_low_33
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 23679046 - 23678807
Alignment:
| Q |
7 |
ccttcttagggttcacgaccaattagccaagtcaagagtccacacatgcagaaagaaatactcctcacttatgagacacataacaactcttaaaaaacct |
106 |
Q |
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| T |
23679046 |
ccttcttagggttcacgaccaattagccaagtcaagagtccacaaatgcagaaacaaatagtcctcacttatgagacacataacaactcttaaaaaacct |
23678947 |
T |
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| Q |
107 |
tgcttctggaagctttcaaaggggaattagtatacaatgta--tgtaaatacatga-tttgtttagatcaatatataaacatacacctatatttgtc--t |
201 |
Q |
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| T |
23678946 |
tgcttctggaagctttcaaaggggaattagtatacaatgtatgtgtaaatacatgattttgtttagatcaatatataaacatacacctatatttgtctat |
23678847 |
T |
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| Q |
202 |
atatatacacattatggagagagagatttcaaacaagaaa |
241 |
Q |
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| T |
23678846 |
atatatacacatgatggagagagatatttcaaacaagaaa |
23678807 |
T |
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