View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_35 (Length: 237)
Name: NF14586_low_35
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 44001852 - 44001639
Alignment:
| Q |
8 |
ctcagcatagatttctgggcccatccaaccattgatgttttgaatcattgggaattttaaagtaccaattttggaatcacaaacacccaactccattttg |
107 |
Q |
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| T |
44001852 |
ctcagcgtagatttctgggcccatccaaccattgatgttttgaatcatatggaattttaaagtaccaattttggaatcataaacacccaacttcattttg |
44001753 |
T |
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| Q |
108 |
gaacttgtcctctcataaaaatcaattagaaattgatcatcctcagaaatatatacaaccttggtatagggatcaaaatcatggtttcccatggcacgaa |
207 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44001752 |
gaacttgtcctctcatataaatcaattagaaattgatcatcctcagaaatatatacaaccttggtatagggatcaaaatcatggtttcccatggcacgaa |
44001653 |
T |
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| Q |
208 |
tagtgtagagttta |
221 |
Q |
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||||||| |||||| |
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| T |
44001652 |
tagtgtacagttta |
44001639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 43992195 - 43992065
Alignment:
| Q |
30 |
atccaaccattgatgttttgaatcattgggaattttaa-agtaccaattttggaatcacaaacacccaactccattttggaacttgtcctctcataaaaa |
128 |
Q |
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|||||||||||| ||||||||||| | ||||| || | ||||||| |||||||||| ||||| ||||| || || |||||||||| ||||||||| |
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| T |
43992195 |
atccaaccattggtgttttgaatc-tcaggaatcttcagagtaccatttttggaatcgtaaacagccaacgtcaattcggaacttgtcaattcataaaaa |
43992097 |
T |
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| Q |
129 |
tcaattagaaattgatcatcctcagaaatata |
160 |
Q |
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| T |
43992096 |
tcaattaacacttaatcatcctcagaaatata |
43992065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 12218226 - 12218122
Alignment:
| Q |
66 |
aaagtaccaattttggaatcacaaacacccaactccattttggaacttgtcctctcataaaaatcaattagaaattgatcatcctcagaaatatatacaa |
165 |
Q |
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|||||||||||||||||| || ||||| |||||| | ||||| |||| | |||||||||||| | || ||||||||||||||||||| || || || |
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| T |
12218226 |
aaagtaccaattttggaaccataaacaaccaacttctttttgttacttcccagctcataaaaatccaacagcaattgatcatcctcagaaacatgtaaaa |
12218127 |
T |
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| Q |
166 |
ccttg |
170 |
Q |
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||||| |
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| T |
12218126 |
ccttg |
12218122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 17362301 - 17362245
Alignment:
| Q |
35 |
accattgatgttttgaatcattgggaattttaaagtaccaattttggaatcacaaac |
91 |
Q |
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||||| ||||||||||||| |||| || || ||||||||| ||||| |||||||||| |
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| T |
17362301 |
accatcgatgttttgaatctttggaaacttaaaagtaccatttttgaaatcacaaac |
17362245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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