View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_40 (Length: 227)
Name: NF14586_low_40
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_40 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 14970280 - 14970505
Alignment:
| Q |
2 |
catcagattgattgtgctattcatgatccaatcaacccctttttgcgagcataggcaactatgattagaaatatagaaatggaaaaaattcctggaaaaa |
101 |
Q |
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| T |
14970280 |
catcagattgattgtactattcatgatccaatcaacccctttttgcgagcataggcaactatgattagaaatatagaaatggaaaaaaatcctggaaaaa |
14970379 |
T |
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| Q |
102 |
taaccacctgccaatagaaaagatataccatattctttatatcgaaaatctcatttgaaaattgcataaagaaaacattgtttaattgtagttacccatt |
201 |
Q |
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| T |
14970380 |
taaccacctgccaatagaaaagatataccatattctttatatcgaaaatctcatttgaaaattgcataaagaaaacattgttcaattgtagttacccatt |
14970479 |
T |
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| Q |
202 |
tgaacatgtaaccatggtcttttgtc |
227 |
Q |
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| T |
14970480 |
tgaacatgtaaccatggtcttttgtc |
14970505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 14987388 - 14987504
Alignment:
| Q |
6 |
agattgattgtgctattcatgatccaatcaacccctttttgcgagcataggcaactatgattagaaatatagaaatggaaaaaattcctggaaaaataac |
105 |
Q |
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| T |
14987388 |
agattgattcagctattcatgatccaaccagcccttttttgcgagcagaggcaactatggtgagaaatatagatatggaaaaaattcctgtaaaaataac |
14987487 |
T |
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| Q |
106 |
cacctgccaatagaaaa |
122 |
Q |
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| T |
14987488 |
cacctgccaataaaaaa |
14987504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 14987554 - 14987605
Alignment:
| Q |
169 |
aaagaaaacattgtttaa-ttgtagttacccatttgaacatgtaaccatggt |
219 |
Q |
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| T |
14987554 |
aaaaaaaacattgtttaaattgtggttacccatttgaacatgtaaccatggt |
14987605 |
T |
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