View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14586_low_7 (Length: 496)
Name: NF14586_low_7
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 1434597 - 1434828
Alignment:
| Q |
16 |
attctcaaaacaaaagagtcattggaaattcatcttaccttcaatgataccaaaccataaatgttgattcttgcatctggaaattcacggctccaaacat |
115 |
Q |
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| T |
1434597 |
attctcaaaacaaaagagtcattggaaattcatcttaccttcaatgataccaaaccataaatgttgattcttgcatctggaaattcacggctccaaacat |
1434696 |
T |
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| Q |
116 |
agacaatcatgaaaactaaagaaattcccatgaatggagaccataaatatggcacaacagccatcacctaagaaaaggatgaaactaaattaacggaaca |
215 |
Q |
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| T |
1434697 |
agacaatcatgaaaactaaagaaattcccatgaatggagaccataaatatggcacaacagccatcacctaagaaaaggatgaaactaaattaacggaaca |
1434796 |
T |
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| Q |
216 |
aatagacggagcaatagaaaagtcattttcat |
247 |
Q |
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| T |
1434797 |
aaaagagggagcaatagaaaagtcattttcat |
1434828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 247 - 479
Target Start/End: Original strand, 1434870 - 1435102
Alignment:
| Q |
247 |
tagcttaactcaattggtatatacattacataacatatacatgggtcgaggtttgaatctgaaacacctacttattcatcgtaagaggtgaacttttaac |
346 |
Q |
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| T |
1434870 |
tagcttaactcaattggtataaacattacataacatatacatgggtcgaggtttgaatctcaaacacctatttattcatcctaagaggtgaacttttaac |
1434969 |
T |
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| Q |
347 |
cactaatctgcttnnnnnnngagttaaataaattgtatttgttcacacgtaccaaaagtgagagtgcgccaaatatcaacatccaaacaaaatctgcagt |
446 |
Q |
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| T |
1434970 |
cactaatctgcttaaaaaaagagttgaataaattgtatttgttcgcacgtaccaaaagtgagagtgcgccaaatatcaacatccaaacaaaatctgcagt |
1435069 |
T |
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| Q |
447 |
tctcttgtcaaatggacctctttccaatgaaac |
479 |
Q |
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| T |
1435070 |
tctcttgtcaaatggacctctttccaatgaaac |
1435102 |
T |
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