View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14586_low_8 (Length: 487)

Name: NF14586_low_8
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14586_low_8
NF14586_low_8
[»] chr2 (10 HSPs)
chr2 (1-487)||(15001836-15002326)
chr2 (1-118)||(809806-809925)
chr2 (1-111)||(39155776-39155887)
chr2 (1-120)||(10414810-10414929)
chr2 (12-123)||(4405004-4405118)
chr2 (1-123)||(2587157-2587279)
chr2 (3-111)||(31713222-31713330)
chr2 (19-67)||(20024520-20024568)
chr2 (30-123)||(44314821-44314914)
chr2 (30-123)||(44323000-44323093)
[»] chr6 (10 HSPs)
chr6 (1-487)||(9821229-9821719)
chr6 (8-105)||(28039676-28039770)
chr6 (3-123)||(13142955-13143075)
chr6 (3-111)||(17354758-17354867)
chr6 (3-105)||(27683378-27683481)
chr6 (3-105)||(27690699-27690802)
chr6 (5-60)||(25479395-25479450)
chr6 (1-123)||(22012894-22013016)
chr6 (30-111)||(27526185-27526266)
chr6 (1-65)||(27650048-27650112)
[»] scaffold0713 (1 HSPs)
scaffold0713 (1-123)||(4042-4164)
[»] chr1 (6 HSPs)
chr1 (1-123)||(17654499-17654621)
chr1 (1-118)||(47051662-47051779)
chr1 (1-63)||(16099746-16099808)
chr1 (1-120)||(29290149-29290268)
chr1 (1-123)||(14649211-14649333)
chr1 (1-123)||(14659001-14659123)
[»] scaffold0406 (1 HSPs)
scaffold0406 (1-123)||(2589-2714)
[»] chr7 (5 HSPs)
chr7 (36-434)||(44061019-44061423)
chr7 (1-135)||(28802505-28802639)
chr7 (2-95)||(29469466-29469551)
chr7 (8-105)||(36265531-36265628)
chr7 (50-113)||(30943343-30943406)
[»] chr8 (4 HSPs)
chr8 (1-118)||(4707615-4707732)
chr8 (30-135)||(15998595-15998700)
chr8 (1-135)||(18981332-18981466)
chr8 (30-65)||(15256673-15256708)
[»] chr3 (6 HSPs)
chr3 (1-135)||(19433916-19434050)
chr3 (1-123)||(6912460-6912586)
chr3 (3-105)||(9436986-9437088)
chr3 (2-65)||(5706673-5706737)
chr3 (1-105)||(28059422-28059526)
chr3 (1-105)||(28069847-28069951)
[»] chr4 (5 HSPs)
chr4 (1-135)||(18695293-18695431)
chr4 (1-105)||(27562275-27562380)
chr4 (9-110)||(54352949-54353050)
chr4 (65-123)||(4764663-4764721)
chr4 (1-48)||(4764617-4764666)
[»] chr5 (3 HSPs)
chr5 (9-135)||(5520564-5520690)
chr5 (1-135)||(15597562-15597696)
chr5 (1-118)||(42784437-42784554)


Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 15001836 - 15002326
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15001836 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatca 15001935  T
Q  101 actcatagttatggcgaatcaaccaaatttgctctgtcataactcccgaagcagcaatgaaagcaacaactatcagctctagtgtttgttgagaaatcaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15001936 actcatagtaatggcgaatcaaccaaatttgctctgtcagaactcccgacgcagcaatgaaagcaacaactatcagctctagtgtttgttgagaaatcaa 15002035  T
Q  201 aacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcctaaccccttctaaatgaacgaaa-- 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      
T  15002036 aacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcctaatcccttctaaatgaacgaaatt 15002135  T
Q  299 ttgtctctacacctctgttctagctttgacatttatgtattaacctttctcaagcttcctccaaggttacagctcccaaatcaacttc--tgtgtgataa 396  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  15002136 ttgtctctacacctctgttctagctttgacattcatgtattaacctttctcaagcttcctccaaggttacagctcccaaatcaacttctatgtgtgataa 15002235  T
Q  397 gcaaggactcaatctagaacccatgaacagaaacgaaaattgggcttggcttgagtatttacccaacaaaatctcaatgagcaactctcaa 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15002236 gcaaggactcaatctagaacccatgaacagaaacgaaaattgggcttggcttgagcatttacccaacaaaatctcaatgagcaactctcaa 15002326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 809806 - 809925
Alignment:
Q  1 caaagggtgtgttccccatttt--tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttat 98  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  809806 caaagggtgtgttccccatttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttat 809905  T
Q  99 caactcatagttatggcgaa 118  Q
    ||||||| || |||| ||||    
T  809906 caactcacagatatgacgaa 809925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 39155776 - 39155887
Alignment:
Q  1 caaagggtgtgttccccatttt-tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatc 99  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39155776 caaagggcgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatc 39155875  T
Q  100 aactcatagtta 111  Q
    |||||| |||||    
T  39155876 aactcacagtta 39155887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 10414929 - 10414810
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    |||| |||| |||||||| ||| ||||| ||||||||||| ||||| || |||||| ||||||||   ||| |||||||| |||||||||||||| ||||    
T  10414929 caaaaggtgcgttccccaatttgataaatactttaacatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatgatcgtcatca 10414830  T
Q  101 actcatagttatggcgaatc 120  Q
    ||||| ||||||| ||||||    
T  10414829 actcacagttatgacgaatc 10414810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 4405118 - 4405004
Alignment:
Q  12 ttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtga---aaatatgcgataatgatcgttatcaactcatag 108  Q
    |||||||||||  |||| ||||| ||||||||| | ||||||||| |||||||| |||| || |   ||||| |||||||||||||||||||||||| ||    
T  4405118 ttccccattttagtaaatactttgacatagaaattaatcaaaataccaataataataattgtaattaaaataagcgataatgatcgttatcaactcacag 4405019  T
Q  109 ttatggcgaatcaac 123  Q
    |||||  ||||||||    
T  4405018 ttatgatgaatcaac 4405004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 2587279 - 2587157
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||| | ||| |||| | ||| |||||||| || ||||| | ||||||||||||||||   ||| | |||||| | |||||||||||| ||||    
T  2587279 caaagggtgtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaataatagagataattaaaataagtgataatgatcgtcatca 2587180  T
Q  101 actcatagttatggcgaatcaac 123  Q
    ||||| ||||||| |||||||||    
T  2587179 actcacagttatgacgaatcaac 2587157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 31713330 - 31713222
Alignment:
Q  3 aagggtgtgttccccatttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaa 101  Q
    ||||||||||||||||||||| || | ||||| |||||| ||||| || |||||||||||||||   ||| |||||||| |||||||||||||| | |||    
T  31713330 aagggtgtgttccccatttttgtagatacttttaacatataaaatcat-aaaatatcaataataacgatattgaaaataagcgataatgatcgtcaccaa 31713232  T
Q  102 ctcatagtta 111  Q
    |||| |||||    
T  31713231 ctcacagtta 31713222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 20024520 - 20024568
Alignment:
Q  19 tttttataaacactttaacatagaaaattatcaaaatatcaataatatt 67  Q
    |||| ||||| ||||||||| ||||||| ||||||||||||||||||||    
T  20024520 ttttaataaatactttaacaaagaaaataatcaaaatatcaataatatt 20024568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 44314914 - 44314821
Alignment:
Q  30 actttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaac 123  Q
    |||||||| || ||||| |  |||||||||||||||   ||| | |||||| | |||||||||||| ||||||||| ||||| | |||||||||    
T  44314914 actttaacttataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacagttacgacgaatcaac 44314821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 44323093 - 44323000
Alignment:
Q  30 actttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaac 123  Q
    |||||||| || ||||| |  |||||||||||||||   ||| | |||||| | |||||||||||| ||||||||| ||||| | |||||||||    
T  44323093 actttaacttataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacagttacgacgaatcaac 44323000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 397; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 9821719 - 9821229
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9821719 caaagggtgtgttccccatttttataaacactttaacatataaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatca 9821620  T
Q  101 actcatagttatggcgaatcaaccaaatttgctctgtcataactcccgaagcagcaatgaaagcaacaactatcagctctagtgtttgttgagaaatcaa 200  Q
    ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9821619 actcacagttatggcgaatcaaccaaatttgctttgtcagaactcccgaagcagcaatgaaaacaacaactatcagctctagtgtttgttgagaaatcaa 9821520  T
Q  201 aacagttttgttggtttctagagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcctaaccccttctaaatgaacgaaa-- 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||      
T  9821519 aacagttttgttggtttctagagatgaagaaacaacacccattatgaagaaagtacagcaacacctccattctcctaacctcttctaaatgaacgaaatt 9821420  T
Q  299 ttgtctctacacctctgttctagctttgacatttatgtattaacctttctcaagcttcctccaaggttacagctcccaaatcaacttc--tgtgtgataa 396  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||  |||||||||     
T  9821419 ttgtctctaaacctctattctagctttgacattcatgtattaacctttctcaagctttcttcaagtttacagctcccaaatcaacttctatgtgtgatat 9821320  T
Q  397 gcaaggactcaatctagaacccatgaacagaaacgaaaattgggcttggcttgagtatttacccaacaaaatctcaatgagcaactctcaa 487  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  9821319 gcaaggactcaatctagaacccatgaacagaaacaaaaattggggttggcttgagtatttacccaacaaaatctcaacgagcaactctcaa 9821229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 28039770 - 28039676
Alignment:
Q  8 tgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactca 105  Q
    ||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  28039770 tgtgttctccatttttataaacactttaacatagaaaat---caaaatatcaataatattaatagtaaaaatatgtgataatgatcgttatcaactca 28039676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 13142955 - 13143075
Alignment:
Q  3 aagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaac 102  Q
    |||||||||||||| |||||| |||| ||||||||||| ||||| || |||||||||||||||   ||| |||||||| |||||||||||||| ||||||    
T  13142955 aagggtgtgttccctatttttgtaaatactttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcgataatgatcgtcatcaac 13143054  T
Q  103 tcatagttatggcgaatcaac 123  Q
    |||  |||| | |||||||||    
T  13143055 tcactgttacgacgaatcaac 13143075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 17354867 - 17354758
Alignment:
Q  3 aagggtgtgttccccatttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaa 101  Q
    ||||||||||||||||||||| |||| ||||| |||||| ||||| || |||||||||||||||   ||| |||||||| || ||||||||||| |||||    
T  17354867 aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtaatcaa 17354768  T
Q  102 ctcatagtta 111  Q
    |||| |||||    
T  17354767 ctcacagtta 17354758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 27683481 - 27683378
Alignment:
Q  3 aagggtgtgttccccatttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaa 101  Q
    ||||||||||||||||||||| |||| ||||| |||||| ||||| || |||||||||||||||   ||| |||||||| || ||||||||||| |||||    
T  27683481 aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaa 27683382  T
Q  102 ctca 105  Q
    ||||    
T  27683381 ctca 27683378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 27690802 - 27690699
Alignment:
Q  3 aagggtgtgttccccatttttataaacacttt-aacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaa 101  Q
    ||||||||||||||||||||| |||| ||||| |||||| ||||| || |||||||||||||||   ||| |||||||| || ||||||||||| |||||    
T  27690802 aagggtgtgttccccatttttgtaaatacttttaacatataaaatcataaaaatatcaataataacgatattgaaaataagcaataatgatcgtcatcaa 27690703  T
Q  102 ctca 105  Q
    ||||    
T  27690702 ctca 27690699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 25479395 - 25479450
Alignment:
Q  5 gggtgtgttccccattttt-ataaacactttaacatagaaaattatcaaaatatcaa 60  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  25479395 gggtgtgttccccattttttataaaca-tttaacatagaaaattatcaaaatatcaa 25479450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 22013016 - 22012894
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||| | ||| |||| | ||| |||||||| || ||||| |  |||||||||||||||   ||| | |||||| | |||||||||||| ||||    
T  22013016 caaagggtgtgcttcccgttttgagaaatactttaacttataaaatcacaaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 22012917  T
Q  101 actcatagttatggcgaatcaac 123  Q
    ||||| ||||| | |||||||||    
T  22012916 actcacagttacgacgaatcaac 22012894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 27526266 - 27526185
Alignment:
Q  30 actttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagtta 111  Q
    |||||||| || ||||||| ||||||||||||||||   ||| | |||||| | |||||||||||| ||||||||| |||||    
T  27526266 actttaacttataaaattaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatcaactcacagtta 27526185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27650112 - 27650048
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataata 65  Q
    ||||||||||| | ||||||||  |||| |||||||| || ||||||| ||||||||||||||||    
T  27650112 caaagggtgtgcttcccattttggtaaatactttaacttataaaattaccaaaatatcaataata 27650048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4164 - 4042
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4164 caaagggtgtgttccccatttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatca 4065  T
Q  101 actcatagttatggcgaatcaac 123  Q
    ||||||||||| | |||||||||    
T  4064 actcatagttacgacgaatcaac 4042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 17654499 - 17654621
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17654499 caaagggtgtgttccccatttttataaaaactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatca 17654598  T
Q  101 actcatagttatggcgaatcaac 123  Q
    ||||| ||||| | |||||||||    
T  17654599 actcacagttacgacgaatcaac 17654621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 47051662 - 47051779
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  47051662 caaagggtgtgttccccattttataaaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatatgataatgatcgttatca 47051761  T
Q  101 actcatagttatggcgaa 118  Q
    ||||| || |||| ||||    
T  47051762 actcacagatatgacgaa 47051779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16099808 - 16099746
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16099808 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataa 16099746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 29290149 - 29290268
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    |||| ||||||||||||| ||| ||||| ||||||| ||| ||||| || |||||| ||||||||   ||| |||||||| |||||||||||||| ||||    
T  29290149 caaaaggtgtgttccccaatttgataaatactttaaaatataaaatcataaaaatagcaataataacgatattgaaaataagcgataatgatcgtcatca 29290248  T
Q  101 actcatagttatggcgaatc 120  Q
    ||||| ||||||| ||||||    
T  29290249 actcacagttatgacgaatc 29290268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 14649333 - 14649211
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||| | |||||||| | ||| |||||||| || ||||| | ||||||||||||||||   ||| | |||||| | |||||||||||| ||||    
T  14649333 caaagggtgtgcttcccattttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 14649234  T
Q  101 actcatagttatggcgaatcaac 123  Q
    ||||| ||||| | |||||||||    
T  14649233 actcacagttacgacgaatcaac 14649211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 14659123 - 14659001
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||| | |||||||| | ||| |||||||| || ||||| | ||||||||||||||||   ||| | |||||| | |||||||||||| ||||    
T  14659123 caaagggtgtgcttcccattttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 14659024  T
Q  101 actcatagttatggcgaatcaac 123  Q
    ||||| ||||| | |||||||||    
T  14659023 actcacagttacgacgaatcaac 14659001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 2714 - 2589
Alignment:
Q  1 caaagggtgtgttccccattttt---ataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgtta 97  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2714 caaagggtgtgttccccattttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgtta 2615  T
Q  98 tcaactcatagttatggcgaatcaac 123  Q
    |||||||| ||||||| |||||||||    
T  2614 tcaactcacagttatgacgaatcaac 2589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 36 - 434
Target Start/End: Original strand, 44061019 - 44061423
Alignment:
Q  36 acatagaaaattatcaaaatatcaataatatt---aatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatttgc 132  Q
    ||||||||||| ||||||| | |||||||| |   |||| | |||||| |||||| ||||||||||||||||| |||||||  ||||||||||| ||||     
T  44061019 acatagaaaataatcaaaacaccaataataatgataataattaaaataagcgatagtgatcgttatcaactcacagttatgatgaatcaaccaagtttgt 44061118  T
Q  133 tctgtcataactcccgaagcagcaatgaaagcaacaactatcagctctagtgtttgttgagaaatcaaaacagttttgttggtttctagagatgaagaaa 232  Q
    | |||   |||||||||||| ||||  |||||||||||||||||||||||||||| ||||| |||| ||||| | |||||||| |||| || ||||||||    
T  44061119 tatgtaccaactcccgaagccgcaactaaagcaacaactatcagctctagtgtttattgaggaatc-aaacaatcttgttggtgtctacaggtgaagaaa 44061217  T
Q  233 caacacccattatgcagaaagtacagcaacacctccattctcctaaccccttctaaatgaacgaaatt---gtctctacacctctgttctagctttgaca 329  Q
     |||||  ||| |||||||| ||||||||||| ||| ||||| ||| |||||| ||| | || |||||   ||||||| ||| || |||||||||  |||    
T  44061218 gaacactgattctgcagaaaatacagcaacacttcccttctcataaacccttcaaaaagcac-aaattctggtctctaaacccctattctagcttcaaca 44061316  T
Q  330 tttatgtattaacctttctcaagcttcctccaaggttacagctcccaaatcaacttct--gtgtgataagcaaggactcaatctagaacccatgaacaga 427  Q
    || | ||||||||||||||  |||||||| |||  ||| |||| |||| |||||| ||  |  ||||| | ||||||||||| |||| ||||  ||||||    
T  44061317 ttcaagtattaacctttctatagcttccttcaattttatagcttccaattcaactcctaagcatgatatggaaggactcaatttagaccccaaaaacaga 44061416  T
Q  428 aacgaaa 434  Q
    |||||||    
T  44061417 aacgaaa 44061423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 28802639 - 28802505
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||   ||| |||||||||| |||||||||||| ||||    
T  28802639 caaagagtgtgttccccatttttataaacactttaacatataaaatcataaaaatatcaataataacgataatgaaaatatgtgataatgatcgtcatca 28802540  T
Q  101 actcatagttatggcgaatcaaccaaatttgctct 135  Q
    |||||  |||||| ||||||| | || ||||||||    
T  28802539 actcactgttatgacgaatcagctaagtttgctct 28802505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 29469466 - 29469551
Alignment:
Q  2 aaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgt 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||||| ||||||||||||    
T  29469466 aaagggtgtgttccccatttttataaacactttaacatagaaaat--------aatcaataatattaatagtgaagatatgtgataatgatcgt 29469551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 36265531 - 36265628
Alignment:
Q  8 tgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactca 105  Q
    ||||| |||||||||| |||| ||||||||||| ||||| || |||||||||||||||   |||  ||||||| | |||||||||| | |||||||||    
T  36265531 tgtgtcccccatttttgtaaatactttaacatataaaatcataaaaatatcaataataacgataaggaaaataagtgataatgatcctcatcaactca 36265628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 30943406 - 30943343
Alignment:
Q  50 caaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagttatg 113  Q
    ||||||||||||||||  |||| | |||||||  ||||||||| |||||||||||||| |||||    
T  30943406 caaaatatcaataataacaataattaaaatatatgataatgattgttatcaactcataattatg 30943343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 4707615 - 4707732
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  4707615 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaagtatcaataatattaatagggaaaatatgcgataatgatcgttatca 4707714  T
Q  101 actcatagttatggcgaa 118  Q
    ||||| || |||| ||||    
T  4707715 actcacagatatgacgaa 4707732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 15998700 - 15998595
Alignment:
Q  30 actttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaaccaaatt 129  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||| | || ||    
T  15998700 acttttacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgttatcaactcagtgttatgacgaatcagctaagtt 15998601  T
Q  130 tgctct 135  Q
    ||||||    
T  15998600 tgctct 15998595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 18981466 - 18981332
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||| | ||| |||| | ||| |||||||| || ||||| | ||||||||||||||||   ||| | |||||| | |||||||||| | ||||    
T  18981466 caaagggtgtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcatcatca 18981367  T
Q  101 actcatagttatggcgaatcaaccaaatttgctct 135  Q
    ||||| |  |||| ||||||||||| |||| ||||    
T  18981366 actcacatctatgtcgaatcaaccacattttctct 18981332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 15256708 - 15256673
Alignment:
Q  30 actttaacatagaaaattatcaaaatatcaataata 65  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15256708 actttaacatataaaattatcaaaatatcaataata 15256673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 19434050 - 19433916
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  19434050 caaagggcatgttccccatttttataaacactttaagatagaaaattatcaaaatatcaataatattaatagtaaaaatatgtgataatgatcgttatca 19433951  T
Q  101 actcatagttatggcgaatcaaccaaatttgctct 135  Q
    ||||| |||||||||  |||||| |||| ||||||    
T  19433950 actcacagttatggcacatcaactaaatctgctct 19433916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6912460 - 6912586
Alignment:
Q  1 caaagggtgtgttccccatttt----tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgtt 96  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  6912460 caaagggtgtgttccccatttttttttataaacactttaacatagaaaattataaaaatatcaataatattaatagggaaaatatgcgataatgatcgtt 6912559  T
Q  97 atcaactcatagttatggcgaatcaac 123  Q
    ||||||||| ||||||| |||||||||    
T  6912560 atcaactcacagttatgacgaatcaac 6912586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 9436986 - 9437088
Alignment:
Q  3 aagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaac 102  Q
    |||||||||||||  |||||  |||| ||||||||||| ||||| || ||| ||||||||||| | ||| |||||||| | |||||||||||  ||||||    
T  9436986 aagggtgtgttccaaattttggtaaatactttaacatataaaatcataaaattatcaataataatgataatgaaaataagtgataatgatcgccatcaac 9437085  T
Q  103 tca 105  Q
    |||    
T  9437086 tca 9437088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 5706673 - 5706737
Alignment:
Q  2 aaagggtgtgttccccattttt-ataaacactttaacatagaaaattatcaaaatatcaataata 65  Q
    |||||||||||||||||||||| ||||| |||||||| || ||||| | ||||||||||||||||    
T  5706673 aaagggtgtgttccccattttttataaatactttaacttataaaataaccaaaatatcaataata 5706737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 28059422 - 28059526
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||| | ||| |||| | ||| |||||||  || ||||| | ||||||||||||||||   ||| | |||||| | |||||||||||| ||||    
T  28059422 caaagggtgtgcttcccgttttgagaaatactttaaattataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 28059521  T
Q  101 actca 105  Q
    |||||    
T  28059522 actca 28059526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 28069847 - 28069951
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||| | ||| |||| | ||| |||||||  || ||||| | ||||||||||||||||   ||| | |||||| | |||||||||||| ||||    
T  28069847 caaagggtgtgcttcccgttttgagaaatactttaaattataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 28069946  T
Q  101 actca 105  Q
    |||||    
T  28069947 actca 28069951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 18695293 - 18695431
Alignment:
Q  1 caaagggtgtgttccccatttt----tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgtt 96  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18695293 caaagggtgtgttccccatttttttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagggaaaatatgcgataatgatcgtt 18695392  T
Q  97 atcaactcatagttatggcgaatcaaccaaatttgctct 135  Q
    |||||||||  | |||| |||||| |  |||||||||||    
T  18695393 atcaactcaccgatatgacgaatcgattaaatttgctct 18695431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27562275 - 27562380
Alignment:
Q  1 caaagggtgtgttccccatttt-tataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatc 99  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27562275 caaagggcgtgttccccattttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgtgataatgatcgttatc 27562374  T
Q  100 aactca 105  Q
    ||||||    
T  27562375 aactca 27562380  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 54352949 - 54353050
Alignment:
Q  9 gtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatag 108  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||   ||| | |||||| | |||||||||||| ||||||||| ||    
T  54352949 gtgttccccatttttataaacactttaacatagaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtcatcaactcacag 54353048  T
Q  109 tt 110  Q
    ||    
T  54353049 tt 54353050  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 4764663 - 4764721
Alignment:
Q  65 attaatagtgaaaatatgcgataatgatcgttatcaactcatagttatggcgaatcaac 123  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  4764663 attaatagggaaaatatgcgataatgatcgttatcaactcacagttatgatgaatcaac 4764721  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4764617 - 4764666
Alignment:
Q  1 caaagggtgtgttccccatttt--tataaacactttaacatagaaaatta 48  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  4764617 caaagggtgtgttccccatttttttataaacactttaacatagaaaatta 4764666  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 5520564 - 5520690
Alignment:
Q  9 gtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatcaactcatag 108  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||   ||| | |||||| | |||||||||||| ||||||||| ||    
T  5520564 gtgttccccatttttataaacactttaacatacaaaatcaccaaaatatcaataatagctataattaaaataagtgataatgatcgtcatcaactcacag 5520663  T
Q  109 ttatggcgaatcaaccaaatttgctct 135  Q
    |||||  |||||||| || ||||||||    
T  5520664 ttatgatgaatcaactaagtttgctct 5520690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 15597696 - 15597562
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||| |||||||   ||| |||||||| | |||||||||||| ||||    
T  15597696 caaagggtgtgttccccatttttataaatactttaacatataaaatcataaaaatattaataataaagataatgaaaataagtgataatgatcgtcatca 15597597  T
Q  101 actcatagttatggcgaatcaaccaaatttgctct 135  Q
    |||||  |  ||| ||||||||||| |||| ||||    
T  15597596 actcactgcaatgtcgaatcaaccacattttctct 15597562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 42784554 - 42784437
Alignment:
Q  1 caaagggtgtgttccccatttttataaacactttaacatagaaaattatcaaaatatcaataatattaatagtgaaaatatgcgataatgatcgttatca 100  Q
    ||||||||||| | ||| |||| | ||| |||||||| || ||||| | ||||||||||||||||   ||| | |||||| | |||||||||||| ||||    
T  42784554 caaagggtgtgcttcccgttttgagaaatactttaacttataaaatcaccaaaatatcaataatagcgataattaaaataagtgataatgatcgtcatca 42784455  T
Q  101 actcatagttatggcgaa 118  Q
    ||||| || |||| ||||    
T  42784454 actcacagatatgacgaa 42784437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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