View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14586_low_9 (Length: 455)
Name: NF14586_low_9
Description: NF14586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14586_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 4 - 439
Target Start/End: Complemental strand, 23412492 - 23412054
Alignment:
| Q |
4 |
aatatcctgaatacgtgaacgtgtgatgtcttagttctataaaaattcgatacaacagctgaaagaaacaaagaagtaaaagtgatataaaaataattaa |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23412492 |
aatatcctgaatacgtgaacgtgttatgtcttagttctataaaaattcgatacaacagctgaaagaaacaaagaagtaaaagtgatataaaaataattaa |
23412393 |
T |
|
| Q |
104 |
gaagattgtaaaattttattattagttttactttgttctataannnnnnnnnnattaaatttaagtcacactcttatattaaaataacaaggtgcttttg |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23412392 |
gaagattggaaaattttattattagttttactttgttctataattttttttt-attaaatttaagtcacactcttatattaaaataacagggtgcttttg |
23412294 |
T |
|
| Q |
204 |
gtcactata----caaagaggctaaaagccccttattgtgtttaaagcttcaatattaatgtttttaatttgaatatttagatttaaacaaaatatgtaa |
299 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23412293 |
gtcactatatatacaaagagactaaaagccccttattgtgtttaaagcttcaatatttatgtttttaatttgaatatttagatttaaaaaaaatatgtac |
23412194 |
T |
|
| Q |
300 |
cgagggagaattttatcatatattgtggttctataatattagtctctgcagttgcacgtaaaaaatactcagtttacatcgaagggatccaataaaaatt |
399 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||| |
|
|
| T |
23412193 |
cgagagagaattttatcatatattgtggttctatcatattagtctctgcagttgcacgtaaaaaatattcggtttacacggaagagatccaataaaaatt |
23412094 |
T |
|
| Q |
400 |
attggaaaactaaatatacacattattttgatatggtgaa |
439 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23412093 |
attggaaaactaaatatacacattatattgatatggtgaa |
23412054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University