View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_high_1 (Length: 494)
Name: NF14587_high_1
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_high_1 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0290 (2 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 476
Target Start/End: Complemental strand, 20487 - 20026
Alignment:
| Q |
15 |
atgaagatgaggcatgaagttaagtgatgaagtgttatgtgtgttcacaattgaaaaatctttgcaagttgtcttgaaactaagaagcaagctaatagtt |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20487 |
atgaagatgaggcatgaagttaagtgatgaagagttatgtgtgttcacaattgataaatctttgcaagttgtcttgaaactaagaagcaagctaatagtt |
20388 |
T |
|
| Q |
115 |
atgacgtgttctaagactcgagatttcttaggaaggattctaagtatgagtatcgcttcatcacgaggtaaactcaactgtcaagtatgtaatatctgtt |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
20387 |
atgacgtgttctaagactcgagatttctcaggaaggattctaagtatgagtaccgcttcatcaggaggtaaactcaactgtcaagtatgtaatatttgtt |
20288 |
T |
|
| Q |
215 |
taaggaaaagcagtaccagtacatgataagactaccatgtgaattaactttaggaagtggcgagaagtgcagggttgttccatttgaccacagaatgtgg |
314 |
Q |
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| T |
20287 |
taaggaaaagcagtaccagtacaagataagactaccatgtgaattaactttaggaagtggcgagaagtgcatggttgttccatttgaccacagaatgtgg |
20188 |
T |
|
| Q |
315 |
attcataggaatgattcggggagttaataacaatgtgttagagtgagtgtgaagtttcactcgtctcaacagattatgtatagggataaagtcaactgtt |
414 |
Q |
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| T |
20187 |
attcataggaatgattcggggagttaataacaatgtggtagcgtgagtgtgaagtttcactcgtctcaacggattatgtatacggataaagtcaactgtt |
20088 |
T |
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| Q |
415 |
gaatcagagtggcgcagcagatgttgaaagatagaggttttaacgagatccgcgaaacctta |
476 |
Q |
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| T |
20087 |
gaatcagagtggcgcatcagatgttgaaagatagagtttttaacgagatcagcgaaacctta |
20026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 476
Target Start/End: Original strand, 14819225 - 14819686
Alignment:
| Q |
15 |
atgaagatgaggcatgaagttaagtgatgaagtgttatgtgtgttcacaattgaaaaatctttgcaagttgtcttgaaactaagaagcaagctaatagtt |
114 |
Q |
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| T |
14819225 |
atgaagatgaggcatgaagttaagtgatgaagagttatgtgtgttcacaattgataaatctttgcaagttgtcttgaaactaagaagcaagctaatagtt |
14819324 |
T |
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| Q |
115 |
atgacgtgttctaagactcgagatttcttaggaaggattctaagtatgagtatcgcttcatcacgaggtaaactcaactgtcaagtatgtaatatctgtt |
214 |
Q |
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| T |
14819325 |
atgacgtgttctaagactcgagatttctcaggaaggattctaagtatgagtaccgcttcatcaggaggtaaactcaactgtcaagtatgtaatatttgtt |
14819424 |
T |
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| Q |
215 |
taaggaaaagcagtaccagtacatgataagactaccatgtgaattaactttaggaagtggcgagaagtgcagggttgttccatttgaccacagaatgtgg |
314 |
Q |
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| T |
14819425 |
taaggaaaagcagtaccagtacaagataagactaccatgtgaattaactttaggaagtggcgagaagtgcatggttgttccatttgaccacagaatgtgg |
14819524 |
T |
|
| Q |
315 |
attcataggaatgattcggggagttaataacaatgtgttagagtgagtgtgaagtttcactcgtctcaacagattatgtatagggataaagtcaactgtt |
414 |
Q |
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| T |
14819525 |
attcataggaatgattcggggagttaataacaatgtggtagcgtgagtgtgaagtttcactcgtctcaacggattatgtatacggataaagtcaactgtt |
14819624 |
T |
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| Q |
415 |
gaatcagagtggcgcagcagatgttgaaagatagaggttttaacgagatccgcgaaacctta |
476 |
Q |
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| T |
14819625 |
gaatcagagtggcgcatcagatgttgaaagatagagtttttaacgagatcagcgaaacctta |
14819686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 2107 - 2245
Alignment:
| Q |
107 |
taatagttatgacgtgttctaagactcgagattt-cttaggaaggattctaagtatgagtatcgcttcatcacgaggtaaactcaactgtcaagtatgta |
205 |
Q |
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|||||||| ||||||||||||||| ||||| ||| || |||||| ||||||||||| |||| |||| || | |||||||||||| | ||||| |||| |
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| T |
2107 |
taatagttgtgacgtgttctaagaatcgaggtttgctcaggaagaattctaagtataagtaccgctgtattagttggtaaactcaaccgccaagtttgta |
2206 |
T |
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| Q |
206 |
atatctgtttaaggaaaagcagtaccagtacatgataag |
244 |
Q |
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| T |
2207 |
atatctgttcaaggaaaagtagtacgaatacatgataag |
2245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 18168 - 18224
Alignment:
| Q |
106 |
ctaatagttatgacgtgttctaagactcgagattt-cttaggaaggattctaagtat |
161 |
Q |
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| T |
18168 |
ctaatagttgtgacgtgttctaagaattgagatttgctcaggaagaattctaagtat |
18224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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