View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_high_3 (Length: 343)
Name: NF14587_high_3
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 52584935 - 52584618
Alignment:
| Q |
18 |
ctatgttaatgtcttattaactcatgtcttcagaatatatactatactagcttttttgctcaaatagtttcttcagtacgtaaaaaacagtgttgattcg |
117 |
Q |
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| T |
52584935 |
ctatgttaatgtcttattaactcatgtcttcagaatatatactatactagcttttttgctcaaatagtttcttcagtacgtaaaaaacagtgttgattcg |
52584836 |
T |
|
| Q |
118 |
attcgattcgattccccctttcactccttttctctttttccataaaaatctctcttctttcactgttctagagagatccacatcacaaaactcacatgct |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584835 |
attcgattcgattccccctttcactccttttctccttttccataaaaatctctcttctttcactgttctagagagatccacatcacaaaactcacatgct |
52584736 |
T |
|
| Q |
218 |
tcatttttccaattgagttgttcccttaagggacacaatacaatacaagtatagaactagtttattttttcaatcactttctctcagacnnnnnnngcta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
52584735 |
tcatttttccaattgagttgttcccttaagggacacaatacaatacaagtatagaactagtttatttattcaatcactttctctcagacaaaaaaagcta |
52584636 |
T |
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| Q |
318 |
gctacaattgatgatgtc |
335 |
Q |
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||||||||| |||||||| |
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| T |
52584635 |
gctacaattaatgatgtc |
52584618 |
T |
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