View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14587_high_5 (Length: 324)

Name: NF14587_high_5
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14587_high_5
NF14587_high_5
[»] chr1 (5 HSPs)
chr1 (17-317)||(47787481-47787781)
chr1 (170-230)||(15939468-15939528)
chr1 (253-301)||(47781503-47781551)
chr1 (33-90)||(47780437-47780494)
chr1 (287-316)||(47811073-47811102)
[»] chr8 (1 HSPs)
chr8 (179-208)||(9190819-9190848)
[»] chr5 (1 HSPs)
chr5 (160-229)||(33401374-33401443)
[»] chr3 (1 HSPs)
chr3 (170-231)||(5443877-5443938)
[»] chr6 (1 HSPs)
chr6 (170-226)||(11751641-11751697)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 47787481 - 47787781
Alignment:
Q  17 aagaaacatgatttgcgatctgcttttcgcaatagattcgttgatttaaattggtcctttatgttagaaaatgactaacttaagaaagtaatttgtaaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47787481 aagaaacatgatttgcgatctgcttttcgcaatagattcgttgatttaaattggtcctttatgttagaaaatgactaacttaagaaagtaatttgtaaca 47787580  T
Q  117 aaacactacacttaaagggctactttgaaaaaatttgtaacataaaaaatatattaaaggattaatttattataaacatccaacttaaaggacagcgtga 216  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47787581 aagcactacacttaaagggctactttgaaaaaaattgtaacataaaaaatatattaaaggattaatttgttataaacatccaacttaaaggacagcgtga 47787680  T
Q  217 ggtatttgacctttaaattaaaatgttatnnnnnnnttgcaaattatattaaacatggccaagaatagaaacttcatctttgcctataaaagctcattca 316  Q
    ||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47787681 ggtatttaacctttaaattaaaatgttataaaaaaattgcaaattatattaaacatggccaagaatagaaacttcatctttgcctataaaagctcattca 47787780  T
Q  317 t 317  Q
    |    
T  47787781 t 47787781  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 15939468 - 15939528
Alignment:
Q  170 ttaaaggattaatttattataaacatccaacttaaaggacagcgtgaggtatttgaccttt 230  Q
    |||||||| |||||||||||||||||| |||||||||||| || |  |||||||| |||||    
T  15939468 ttaaaggactaatttattataaacatctaacttaaaggactgcatatggtatttggccttt 15939528  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 47781503 - 47781551
Alignment:
Q  253 ttgcaaattatattaaacatggccaagaatagaaacttcatctttgcct 301  Q
    ||||||||||||||||||| |||||||||  || |||||||||||||||    
T  47781503 ttgcaaattatattaaacaaggccaagaaaggacacttcatctttgcct 47781551  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 47780437 - 47780494
Alignment:
Q  33 gatctgcttttcgcaatagattcgttgatttaaattggtcctttatgttagaaaatga 90  Q
    |||||| |||||||||| || || ||| |||||| |||||||||| ||||||||||||    
T  47780437 gatctgattttcgcaatggactcattggtttaaactggtcctttaagttagaaaatga 47780494  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 316
Target Start/End: Original strand, 47811073 - 47811102
Alignment:
Q  287 acttcatctttgcctataaaagctcattca 316  Q
    ||||||||||||||||||||||||||||||    
T  47811073 acttcatctttgcctataaaagctcattca 47811102  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 208
Target Start/End: Original strand, 9190819 - 9190848
Alignment:
Q  179 taatttattataaacatccaacttaaagga 208  Q
    ||||||||||||||||||||||||||||||    
T  9190819 taatttattataaacatccaacttaaagga 9190848  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 33401443 - 33401374
Alignment:
Q  160 aaaaaatatattaaaggattaatttattataaacatccaacttaaaggacagcgtgaggtatttgacctt 229  Q
    ||||||||  |||||||| |||| | ||||||||||  |||||||||||| ||| |||||||||| ||||    
T  33401443 aaaaaataacttaaaggactaatatgttataaacatataacttaaaggaccgcgagaggtatttggcctt 33401374  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 5443877 - 5443938
Alignment:
Q  170 ttaaaggattaatttattataaacatccaacttaaaggacagcgtgaggtatttgaccttta 231  Q
    ||||| || |||||| ||||||||||| |||||||||||  ||  |||||||||||||||||    
T  5443877 ttaaaagactaatttgttataaacatctaacttaaaggattgcacgaggtatttgaccttta 5443938  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 11751697 - 11751641
Alignment:
Q  170 ttaaaggattaatttattataaacatccaacttaaaggacagcgtgaggtatttgac 226  Q
    |||||||| |||| | ||||||||||  |||||||||||| ||| ||||||||||||    
T  11751697 ttaaaggactaatctgttataaacatataacttaaaggaccgcgggaggtatttgac 11751641  T

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