View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_low_1 (Length: 695)
Name: NF14587_low_1
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 609; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 31 - 680
Target Start/End: Original strand, 7636141 - 7636790
Alignment:
| Q |
31 |
cctaaatttcatggatgatttagttnnnnnnnttaggaacaaaaataccaataaggatgagtcaataccataagcacagctttgatgtggtcaagagtga |
130 |
Q |
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| T |
7636141 |
cctaaatttcatggatgatttagttaaaaaatttaggaacaaaaataccaataaggatgagtcaataccataagcacagctttgatgtggtcaagagtga |
7636240 |
T |
|
| Q |
131 |
gatcaaaagagagtgagtgatcattcatcatctgcaataaggtatcaataatatcatctacttcttgttccttagttttaggccttgctgaattatccat |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7636241 |
gatcaaaagagagtgagtgatcattcatcatctgcaataagatatcaataatatcatctacttcttgttccttagttttaggccttgctgaattatccat |
7636340 |
T |
|
| Q |
231 |
gtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatccaacccaacaat |
330 |
Q |
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| T |
7636341 |
gtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatccaacccaacaat |
7636440 |
T |
|
| Q |
331 |
ggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactt |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7636441 |
ggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttctcttttgtccacttcccaattcaactt |
7636540 |
T |
|
| Q |
431 |
cttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagttcgcacctttttc |
530 |
Q |
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| T |
7636541 |
cttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgagagacatcaatatttcactcaagttcgcacctttttc |
7636640 |
T |
|
| Q |
531 |
atcaccaccatattgcgacaacttttgaatcaatttggccacttcattttctctaacgggcctaaaagaatggacacgttgagagctaaagaggtgatga |
630 |
Q |
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| T |
7636641 |
atcaccaccatattgcgacaacttttgaatcaattgggccacttcattttctctaacgggcctaaaagaatggacacgttgagagctaaagagatgttga |
7636740 |
T |
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| Q |
631 |
acacaaagttttctcatctctctccaataaggactataaggtgcaaaagc |
680 |
Q |
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| T |
7636741 |
acacaaagttttctcatctctctccaataaggactataaggtgcaaaagc |
7636790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 80 - 680
Target Start/End: Original strand, 7629407 - 7630007
Alignment:
| Q |
80 |
aataaggatgagtcaataccataagcacagctttgatgtggtcaagagtgagatcaaaagagagtgagtgatcattcatcatctgcaataaggtatcaat |
179 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| ||||||| |
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| T |
7629407 |
aataaggacgagtccataccataagcacagctttgatgtggtcgagagtgagatcaaaagagagtgaatgatcattcatcatttgtaataagatatcaat |
7629506 |
T |
|
| Q |
180 |
aatatcatctacttcttgttccttagttttaggccttgctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgtt |
279 |
Q |
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| T |
7629507 |
aatatcatctacttcttgttccttagttttaggccttgctgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgtt |
7629606 |
T |
|
| Q |
280 |
ttatcaagcctcccaagagttcctttgactctatcaatccaacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcat |
379 |
Q |
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| T |
7629607 |
ttatcaagcctcccaagtgttcctttgactctatcaatccaaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcat |
7629706 |
T |
|
| Q |
380 |
taagcaaaacttgcaatctacttctcctttgtccacttcccaattcaacttcttcttcataatcacaaacatatgtttttccaaaagctatcttacatat |
479 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7629707 |
taagcaaaacttgcaatctacttctcctttgtccacttcccaattcaactccttcttcataatcacaaacatatgttttcccaaaagctatcttacatat |
7629806 |
T |
|
| Q |
480 |
aattgtatttgtgagagacatcaatatttcactcaagttcgcacctttttcatcaccaccatattgcgacaacttttgaatcaatttggccacttcattt |
579 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7629807 |
aattgtatttgtgagagacatcaatatttcactcaagttcgcacctttttcatcaccaccatattgcgacaacttttgaatcaattgggccacttcattt |
7629906 |
T |
|
| Q |
580 |
tctctaacgggcctaaaagaatggacacgttgagagctaaagaggtgatgaacacaaagttttctcatctctctccaataaggactataaggtgcaaaag |
679 |
Q |
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| T |
7629907 |
tctctaacgggcctaaaagaatgggcacgttgagagctaaagaggtgatgaacacaaagttttctcatctctctccaataaggactataaggtgcacaag |
7630006 |
T |
|
| Q |
680 |
c |
680 |
Q |
| |
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| |
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|
| T |
7630007 |
c |
7630007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 95 - 678
Target Start/End: Original strand, 7623113 - 7623696
Alignment:
| Q |
95 |
ataccataagcacagctttgatgtggtcaagagtgagatcaaaagagagtgagtgatcattcatcatctgcaataaggtatcaataatatcatctacttc |
194 |
Q |
| |
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||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| ||||| | ||||| |
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| T |
7623113 |
ataccataagcacagctttgacgtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcaatgatatctgcaacttc |
7623212 |
T |
|
| Q |
195 |
ttgttccttagttttaggccttgctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctccca |
294 |
Q |
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||| ||||| ||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7623213 |
ttgctccttggttttaggctttgttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctccca |
7623312 |
T |
|
| Q |
295 |
agagttcctttgactctatcaatccaacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgca |
394 |
Q |
| |
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||||||||||||| |||||||| |||||| ||||||||||||| ||| ||||||||||| |||| |||||||| || |||||||||||||||||||||| |
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| T |
7623313 |
agagttcctttgattctatcaacccaacctaacaatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgca |
7623412 |
T |
|
| Q |
395 |
atctacttctcctttgtccacttcccaattcaacttcttcttcataatcacaaacatatgtttttccaaaagctatcttacatataattgtatttgtgag |
494 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| |
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| T |
7623413 |
atctacttcttctttctccacttcccaattcaacttcttcctcataatcaaaaacatattttttcccaaaagctatcttacatataattgcatttgtgaa |
7623512 |
T |
|
| Q |
495 |
agacatcaatatttcactcaagttcgcacctttttcatcaccaccatattgcgacaacttttgaatcaatttggccacttcattttctctaacgggccta |
594 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||||||| |||| || |||| |||||||||||||| ||||||||||||||||||| |||||| |
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| T |
7623513 |
agatatcaatatttcactcaagtttacacctttttcatcaccatcatactgtgacagcttttgaatcaattcagccacttcattttctctaataggccta |
7623612 |
T |
|
| Q |
595 |
aaagaatggacacgttgagagctaaagaggtgatgaacacaaagttttctcatctctctccaataaggactataaggtgcaaaa |
678 |
Q |
| |
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|||||||| | || || || ||||||||||||| || ||||||| ||| |||| ||||||||||||| ||||||||||||||| |
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| T |
7623613 |
aaagaatgtagacttttagggctaaagaggtgaagagcacaaagctttttcatatctctccaataagagctataaggtgcaaaa |
7623696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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