View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_low_12 (Length: 283)
Name: NF14587_low_12
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 40505735 - 40505988
Alignment:
| Q |
14 |
cagagacaaaaagaatgttgttgactttgtttgcttgagaatatgttcccaaagcagcaggtgctttttctgtttcaacagcttccttaattcctattcc |
113 |
Q |
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| T |
40505735 |
cagagacaaaaagaatgttgttgactttgtttgcttgagaatatggtcccaaagcagcaggtgctttttctgtttcaacagcttccttaattcctattcc |
40505834 |
T |
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| Q |
114 |
tacaatcaatcaaacccaacaagcactaaatcatagatttatacattcctcaatccatgatcagaattaacgttaacattaggaaaaacaatgacccgta |
213 |
Q |
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| T |
40505835 |
tacaatcaatcaaacccaacaagcactaaatcatagatttatacattcctcaatccatgatcagaattaacgttaacattaggaaaaacaattacccgta |
40505934 |
T |
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| Q |
214 |
ttgtaaaaaatgtaactttattgattttggtggaaaatgcaatgaagaagaaat |
267 |
Q |
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| T |
40505935 |
ttgtaaaaaatgtaactttattgattttggtggaaaatgcaatgaagaagaaat |
40505988 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 20483087 - 20483172
Alignment:
| Q |
16 |
gagacaaaaagaatgttgttgactttgtttgcttgagaatatgttcccaaagcagcaggtgctttttctgtttcaacagcttcctt |
101 |
Q |
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| T |
20483087 |
gagacaaatagaaggttgttggctttgattgcttgagaatacggtcccaatgctgctggggctttttctgtcgaaacagcttcctt |
20483172 |
T |
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