View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14587_low_13 (Length: 268)

Name: NF14587_low_13
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14587_low_13
NF14587_low_13
[»] chr6 (15 HSPs)
chr6 (14-252)||(21968002-21968240)
chr6 (53-252)||(22001826-22002025)
chr6 (14-252)||(22085885-22086124)
chr6 (150-224)||(22207071-22207145)
chr6 (151-252)||(18995490-18995591)
chr6 (151-252)||(18979426-18979527)
chr6 (151-252)||(20083722-20083823)
chr6 (151-252)||(20235826-20235927)
chr6 (151-252)||(22129810-22129911)
chr6 (154-228)||(20233467-20233541)
chr6 (154-228)||(22127451-22127525)
chr6 (156-224)||(18990806-18990874)
chr6 (172-224)||(24387200-24387252)
chr6 (14-89)||(20235992-20236067)
chr6 (14-89)||(22129976-22130051)
[»] chr1 (9 HSPs)
chr1 (148-239)||(47619488-47619579)
chr1 (151-240)||(47584565-47584654)
chr1 (150-221)||(47743701-47743772)
chr1 (150-221)||(47758102-47758173)
chr1 (150-224)||(47627662-47627736)
chr1 (149-227)||(47593635-47593713)
chr1 (151-224)||(47711221-47711294)
chr1 (151-227)||(47698603-47698679)
chr1 (169-221)||(47700942-47700994)
[»] scaffold0074 (1 HSPs)
scaffold0074 (151-252)||(49868-49969)
[»] scaffold0007 (1 HSPs)
scaffold0007 (151-252)||(7402-7503)
[»] chr8 (3 HSPs)
chr8 (154-230)||(10401449-10401525)
chr8 (150-221)||(11225256-11225327)
chr8 (150-224)||(4159642-4159716)
[»] chr5 (3 HSPs)
chr5 (151-224)||(469773-469846)
chr5 (13-72)||(9102855-9102914)
chr5 (150-224)||(453816-453890)
[»] chr7 (4 HSPs)
chr7 (150-224)||(19939303-19939377)
chr7 (150-224)||(19970442-19970516)
chr7 (150-242)||(20285111-20285203)
chr7 (150-242)||(20294828-20294920)
[»] chr2 (1 HSPs)
chr2 (157-224)||(2672718-2672785)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 21968240 - 21968002
Alignment:
Q  14 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaat 113  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21968240 tcaagaggaaggaagtacaaatagaattgttggaacatagtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaat 21968141  T
Q  114 tcaagttaaattaacatcaaatttcannnnnnngtacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttat 213  Q
    ||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21968140 tcaagttaaattaacgtcaaatttcatttttttgtacagtggttatatgtctccagaatatgcaatgttttgacaattttctgaaaaatcagatgtttat 21968041  T
Q  214 agttttggagtcatgatcctagagattgtagctggaaag 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21968040 agttttggagtcatgatcctagagattgtagctggaaag 21968002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 53 - 252
Target Start/End: Complemental strand, 22002025 - 22001826
Alignment:
Q  53 gtaagtttcaaatgttcactactctattatctttttcaggttcttattgattacggtaaattcaagttaaattaacatcaaatttcannnnnnngtacag 152  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |       ||| ||    
T  22002025 gtaagtttcaaatgtttactactctattatctttttcaggttcttattgattacggtaaattcaagttaaattaacgtcaaatttaatttgtttgtaaag 22001926  T
Q  153 tggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaaag 252  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  22001925 tggttatatgtctccagaatatgcaatgtttagacaattttctgaaaaatcagatatttatagttttggagtcatgatcatagagattgtagctggaaag 22001826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 22086124 - 22085885
Alignment:
Q  14 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttca-ggttcttattgattacggtaaa 112  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||| | ||||||| | |  |||||||||||||| | ||| |    
T  22086124 tcaagacgaaggaagtacaaatagaattgttggaacatagtaagttttaaatgtttactactttgttatcttatccccggttcttattgattgccgtaca 22086025  T
Q  113 ttcaagttaaattaacatcaaatttcannnnnnngtacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgttta 212  Q
    || |||||||||||||||||| |||          ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22086024 tttaagttaaattaacatcaatttttttttttttttacagtggttatatgtcgccagaatatgcaatgtttggacaattttctgaaaaatcagatgttta 22085925  T
Q  213 tagttttggagtcatgatcctagagattgtagctggaaag 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22085924 tagttttggagtcatgatcctagagattgtagctggaaag 22085885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 22207071 - 22207145
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||||||    
T  22207071 cagtggttatatgtctccagaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagt 22207145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 18995591 - 18995490
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 250  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  18995591 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 18995492  T
Q  251 ag 252  Q
    ||    
T  18995491 ag 18995490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 18979527 - 18979426
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 250  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||  | |||||||||||||| ||| |  |||||||| | |||||||    
T  18979527 agtggttatatgtctccggaatatgtaatgtttggacaattttctgaaaaatccgacatatatagttttggagttatgcttgtagagattattgctggaa 18979428  T
Q  251 ag 252  Q
    ||    
T  18979427 ag 18979426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 20083823 - 20083722
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 250  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  20083823 agtggttatatgtctccggaatatgtaatgttcggacaattttctgaaaaatccgacatttatagttttggagttatgcttatagagattattgctggaa 20083724  T
Q  251 ag 252  Q
    ||    
T  20083723 ag 20083722  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 20235927 - 20235826
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 250  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  20235927 agtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 20235828  T
Q  251 ag 252  Q
    ||    
T  20235827 ag 20235826  T

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Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 22129911 - 22129810
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 250  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  22129911 agtggttatatgtctccggaatatgcaatggtcggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 22129812  T
Q  251 ag 252  Q
    ||    
T  22129811 ag 22129810  T

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Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 20233467 - 20233541
Alignment:
Q  154 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatg 228  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| ||||| ||||||||||||||||||||||||    
T  20233467 ggttatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatg 20233541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 22127451 - 22127525
Alignment:
Q  154 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatg 228  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| ||||| ||||||||||||||||||||||||    
T  22127451 ggttatatgtctccagaatatgcgatgctcgggcaattttctgagaaatctgatgtttatagttttggagtcatg 22127525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 18990874 - 18990806
Alignment:
Q  156 ttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| || ||  ||||||||||||||||    
T  18990874 ttatatgtctccggaatatgtaatgtttggacaattttctgaaaattccgacatttatagttttggagt 18990806  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 24387200 - 24387252
Alignment:
Q  172 tatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    |||| ||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  24387200 tatgtaatgtttggacaattttctgaaaaatccgacatttatagttttggagt 24387252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 20236067 - 20235992
Alignment:
Q  14 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttc 89  Q
    |||||| || |||||||||||| || |||||||||||| ||||||||  |||||| ||  |||| |||||||||||    
T  20236067 tcaagatgagggaagtacaaatagaattgttggaacattgtaagttttgaatgttgacccctctgttatctttttc 20235992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 22130051 - 22129976
Alignment:
Q  14 tcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcactactctattatctttttc 89  Q
    |||||| || |||||||||||| || |||||||||||| ||||||||  |||||| ||  |||| |||||||||||    
T  22130051 tcaagatgagggaagtacaaatagaattgttggaacattgtaagttttgaatgttgacccctctgttatctttttc 22129976  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 47619488 - 47619579
Alignment:
Q  148 tacagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagat 239  Q
    |||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||| |||| |||||||||||| |||||| |||||||    
T  47619488 tacagtggttatatgtctcctgaatatgcaatgcttggaaaattctctgaaaaatcagacgtttttagttttggagtaatgatcatagagat 47619579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 47584565 - 47584654
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagatt 240  Q
    ||||||||||| |||||||||||||| |||  |||| | |||||||  ||||||||||| |||||||||||| ||||| | |||||||||    
T  47584565 agtggttatatatctccagaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagatt 47584654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 47743772 - 47743701
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttgg 221  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| |||||||||    
T  47743772 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttgg 47743701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 47758173 - 47758102
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttgg 221  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| |||||||||    
T  47758173 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttgg 47758102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 47627662 - 47627736
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    ||||||||| |||||||| ||||||||||||  |||||||||||| || || || ||||||| ||||||||||||    
T  47627662 cagtggttacatgtctccggaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagt 47627736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 47593635 - 47593713
Alignment:
Q  149 acagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcat 227  Q
    |||| ||||| ||||| ||||||||||||||| ||||||| ||||| || || || ||||||| ||||||||| |||||    
T  47593635 acaggggttacatgtccccagaatatgcaatgcttggacacttttcagagaagtcggatgtttttagttttggtgtcat 47593713  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 47711294 - 47711221
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    ||||| |||||| |||| || |||| || ||||||| ||||||| | |||||||||||||| ||||||||||||    
T  47711294 agtggatatatggctcccgagtatgtaaggtttggagaattttcggtaaaatcagatgtttttagttttggagt 47711221  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 47698603 - 47698679
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcat 227  Q
    ||||| ||||||||||  ||||||||||||  ||||||| |||| |||||||| || ||||  ||||||||||||||    
T  47698603 agtggctatatgtctcaggaatatgcaatgcatggacaactttcagaaaaatcggacgttttcagttttggagtcat 47698679  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 47700994 - 47700942
Alignment:
Q  169 gaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttgg 221  Q
    |||||||||||||||||||||||||| |  ||||| ||||||| |||||||||    
T  47700994 gaatatgcaatgtttggacaattttcagtcaaatcggatgtttttagttttgg 47700942  T

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Target: scaffold0074 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 49868 - 49969
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 250  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  49868 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatccgacatttatagttttggagttatgcttttagagattattgctggaa 49967  T
Q  251 ag 252  Q
    ||    
T  49968 ag 49969  T

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Target: scaffold0007 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 7402 - 7503
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgtagctggaa 250  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||  |||||||||||||||| ||| |  |||||||| | |||||||    
T  7402 agtggttatatgtctccggaatatgcaatgcttggacaattttctgaaaaatctgacatttatagttttggagttatgcttttagagattattgctggaa 7501  T
Q  251 ag 252  Q
    ||    
T  7502 ag 7503  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 10401525 - 10401449
Alignment:
Q  154 ggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgat 230  Q
    |||||||| |||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  10401525 ggttatatatctccagaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgat 10401449  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 11225256 - 11225327
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttgg 221  Q
    |||||| |||||| |||| || ||||||||||||||| ||||||| | |||||||||||||| |||||||||    
T  11225256 cagtggatatatggctcctgagtatgcaatgtttggagaattttcggtaaaatcagatgtttttagttttgg 11225327  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 4159716 - 4159642
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    ||||||||||||| | || ||||||||||||   ||||  |||||||| ||||||||||||||||| ||||||||    
T  4159716 cagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagt 4159642  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 469846 - 469773
Alignment:
Q  151 agtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    ||||||||||||||||| ||||||||||||   |||||||||||||| ||||| ||||| |  |||||||||||    
T  469846 agtggttatatgtctccggaatatgcaatgcacggacaattttctgagaaatccgatgtgttcagttttggagt 469773  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 9102855 - 9102914
Alignment:
Q  13 atcaagaggaaggaagtacaaattgagttgttggaacatagtaagtttcaaatgttcact 72  Q
    ||||||| ||||||||||||||| || |||||||| ||||||||||||  ||||||||||    
T  9102855 atcaagacgaaggaagtacaaatagaattgttggagcatagtaagttttgaatgttcact 9102914  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 453890 - 453816
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    |||||||||||||||| | ||||||||||||  |||||| | ||| |||||||||||||| | ||| ||||||||    
T  453890 cagtggttatatgtcttccgaatatgcaatgcatggacattattcagaaaaatcagatgtgtttagctttggagt 453816  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 19939303 - 19939377
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    |||||||||||||||||||||||||||||||   ||||  |||||||| ||||| ||||| | ||| ||||||||    
T  19939303 cagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagt 19939377  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 19970442 - 19970516
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    |||||||||||||||||||||||||||||||   ||||  |||||||| ||||| ||||| | ||| ||||||||    
T  19970442 cagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctttagctttggagt 19970516  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 20285111 - 20285203
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgt 242  Q
    |||||| ||||||||||| ||||||||||||   |||  |||||| || ||||||||| ||| ||||||||| ||  |||| |||||||||||    
T  20285111 cagtggctatatgtctccggaatatgcaatgcaaggattattttcagagaaatcagatttttttagttttggtgttttgatactagagattgt 20285203  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 20294828 - 20294920
Alignment:
Q  150 cagtggttatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagtcatgatcctagagattgt 242  Q
    |||||| ||||||||||| ||||||||||||   |||  |||||| || ||||||||||||| ||| ||||| ||  |||| |||||||||||    
T  20294828 cagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagattgt 20294920  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 2672718 - 2672785
Alignment:
Q  157 tatatgtctccagaatatgcaatgtttggacaattttctgaaaaatcagatgtttatagttttggagt 224  Q
    ||||||||||||||||||||||||  |||| | |||||||  ||||| |||||||  |||||||||||    
T  2672718 tatatgtctccagaatatgcaatgggtggatatttttctgcgaaatctgatgttttcagttttggagt 2672785  T

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