View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_low_14 (Length: 246)
Name: NF14587_low_14
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 18804693 - 18804936
Alignment:
| Q |
1 |
ttaagcctcataagaaccattcaattcactcggcttaaagcaagcagtgactttaaactcgaccttagaagaatcaagtaggttacactcgacctcaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18804693 |
ttaagcctcataagaaccattcaattcactcggcttaaagcacgcagtgactttaaactcgaccttagaagaatcaagtaggttacactcgacctcaaag |
18804792 |
T |
|
| Q |
101 |
caggggcggacacagacttttgatatgtccctgcctcaaaggaaccatttaggtcatactcaggctcaaaggaaccatcaaggttatacttggtctcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18804793 |
gaggggcggacacagacttttgatatgtccctgcctcaaaggaaccatttaggccatactcaggctcaaaggaaccatcaaggttatacttggtctcaaa |
18804892 |
T |
|
| Q |
201 |
gaggctaaggttacacttggcctcaaaggagcaattcatctcac |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18804893 |
gaggctaaggttacacttggcctcaaaggagcaattcatatcac |
18804936 |
T |
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