View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_low_15 (Length: 236)
Name: NF14587_low_15
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 4130973 - 4130753
Alignment:
| Q |
16 |
tcaatgtcatccaaggcctcttgatcattctccaccaaagcatctattctcccttccatataacaatcacaagcccaatctgtcaaaattgccttctctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4130973 |
tcaatgtcatccaaggcctcttgatcattctccaccaaagcatctattctcccttccatataacaatcacaagcccaatctgtcaaaattgccttctctt |
4130874 |
T |
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| Q |
116 |
cctcccccgactccatcagcaccacactttttctgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcacagggac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4130873 |
cctcccccgactccatcagcaccacactttttctgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcacagggac |
4130774 |
T |
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| Q |
216 |
attcttgaaccattcaggagc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
4130773 |
attcttgaaccattcaggagc |
4130753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 4107792 - 4107572
Alignment:
| Q |
16 |
tcaatgtcatccaaggcctcttgatcattctccaccaaagcatctattctcccttccatataacaatcacaagcccaatctgtcaaaattgccttctctt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |
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| T |
4107792 |
tcaatgtcatccaaggcctcttgatcattctccaccaaagcatctattctcccttccatataacaatcacaggcccaatctgtcaaaattgctttttctt |
4107693 |
T |
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| Q |
116 |
cctcccccgactccatcagcaccacactttttctgcagcaaacaatttctaacaacatggcaccaaagctgtaaacatccactttagccgtcacagggac |
215 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
4107692 |
cctcccctgactccatcagcaccacactttttctgcagcaaacaatttccaacaacatggcaccaaagctgtaaacatccactttagccgtcactggaac |
4107593 |
T |
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| Q |
216 |
attcttgaaccattcaggagc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
4107592 |
attcttgaaccattcaggagc |
4107572 |
T |
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