View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_low_3 (Length: 481)
Name: NF14587_low_3
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_low_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 232 - 481
Target Start/End: Complemental strand, 44952647 - 44952399
Alignment:
| Q |
232 |
atttacatatttgaagtaaagtatcatctgtatgaaaatgtatgtgcgtcgagtcgtgtccaagtgagacgttatctaatctcgagcatgttataacact |
331 |
Q |
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| T |
44952647 |
atttacatatttgaagtaaagtatcatctttgtcaaaatgtatgtgcgtcgagtcgtgtccaagtgagacgttatctaatctcgagcatgttataacact |
44952548 |
T |
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| Q |
332 |
atacatatattagaatagtctaggcctacgaggggcgcaagacccgtgttaggaccaatgaacaaagtgaagtatgtgtgtgtaagtggtcatcatatct |
431 |
Q |
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| T |
44952547 |
atacatatattagaatagtctaggcctacgaggggcgcaagacccgtgttaggaccaatgaacaaagtgaagtatgtgtgtttaa-tggtcatcatatct |
44952449 |
T |
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| Q |
432 |
tgacaaacctaagtgcggggaacacaaacacactagatgtggatctattt |
481 |
Q |
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| T |
44952448 |
tgacaaacctaagtgtggggaacacaaacacactagatgtggatctattt |
44952399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 44953541 - 44953379
Alignment:
| Q |
78 |
acatgattatgttatgatgtaaatgaccatgttataaattttttccatttaaagttacattgtagtgttattattataaattaaagtctgtgattgttta |
177 |
Q |
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| T |
44953541 |
acatgactatgttatgttgtaaatgaccatgttataaattttttgcatttaaagtgacattgtagtgttattattctaaattaaagtatgtgattgttta |
44953442 |
T |
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| Q |
178 |
gctttctaagtgaatatgtgactatattatgttgatgtgaattatttaagtgtaatttacata |
240 |
Q |
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| T |
44953441 |
gctttctaagtgaatatgtgactatattatgttgatgtgaattctttaagtgtaatttacata |
44953379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 44953441 - 44953514
Alignment:
| Q |
9 |
ctaaacaatcacagacattaatttagaataataacactaccatgtcactttaaatgcaaaaaatttataacatg |
82 |
Q |
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| T |
44953441 |
ctaaacaatcacatactttaatttagaataataacactacaatgtcactttaaatgcaaaaaatttataacatg |
44953514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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