View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_low_4 (Length: 438)
Name: NF14587_low_4
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 24189030 - 24188607
Alignment:
| Q |
1 |
tgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24189030 |
tgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagag |
24188931 |
T |
|
| Q |
101 |
acggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagtta |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24188930 |
acggaaccaaaggttgttttcggagttaacggtgacgtctttagtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagtta |
24188831 |
T |
|
| Q |
201 |
aagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaattgtaagaagtgaaattgtagcgcggaccttacaaggaagaacaggtt |
300 |
Q |
| |
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||||||||||| |||||||| ||||| || |||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24188830 |
aagagacggcgattgacggtgccgtttgcgcgacatgaagagtccgttaaaactgtaagaagtgaaattgtagcgcggaccttccaaggaagaacaggtt |
24188731 |
T |
|
| Q |
301 |
tgggtttatttgtggacattgaaattttgggtttcttgatttagctaaacttagaagatacgtaataaat-aaccatgctttcaaaaataataaataaac |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24188730 |
tgggtttatttgtggacattgaaattttgggtttcttgatttagctaaacttagaagatacgtaataaataaaccatgctttcaaaaataataaataaat |
24188631 |
T |
|
| Q |
400 |
tatagaagataagatgatggatat |
423 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
24188630 |
tatagaagataagatgatggatat |
24188607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 4 - 417
Target Start/End: Complemental strand, 24179221 - 24178803
Alignment:
| Q |
4 |
agccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagagacg |
103 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||| | |||||||| |||||||||| |||||||||||||||||||||| || ||||||||||| |
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| T |
24179221 |
agccaccgccgtggaagaaaatgacgacaggaagggaggttgctttggtggcaccaccatctccggtgacttctccggcaacagtgggggtaaagagacg |
24179122 |
T |
|
| Q |
104 |
gaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagttaaag |
203 |
Q |
| |
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||||||| ||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24179121 |
aaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaagaagttaaag |
24179022 |
T |
|
| Q |
204 |
agacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaattgtaagaagtgaaattgtagcgcggaccttacaaggaagaacaggtttgg |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
24179021 |
agacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaactgtaagaagtgaaattgtagcgcggaccttccaaggaagaagaggtttgg |
24178922 |
T |
|
| Q |
304 |
gtttatttgtggacattgaaattttgggtttcttgatttagctaaacttagaagatac---gtaataaat-aaccatgctttcaaa-aataataaataaa |
398 |
Q |
| |
|
||| ||| | |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| |||||||| |||||||||||| |
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| T |
24178921 |
gttggtttttagacattgaaattttgggttttttgatttagctaaaattagaagatacatagtaataaataaaccatcctttcaaagaataataaataag |
24178822 |
T |
|
| Q |
399 |
ctatagaagataagatgat |
417 |
Q |
| |
|
| |||||||||| |||||| |
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| T |
24178821 |
ccatagaagataggatgat |
24178803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 24168788 - 24168476
Alignment:
| Q |
1 |
tgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggagtaaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||| || |||||||||| ||||||| || |||||||| |
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| T |
24168788 |
tgaagccaccaccgtggaagaaaatgacaacgggaagggaggttgttttggttgcaccaccatctccgacgacttctccgccaacagtgggtgtaaagag |
24168689 |
T |
|
| Q |
101 |
acggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaagaagtta |
200 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| |||||| ||||||| ||||||| |||||||| ||||| ||||||||| | |||||||||| |
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|
| T |
24168688 |
acggaaccaaacgttattttcggagttaacggtaatgtctttgatggaaacaccgttaacgggagtggcattaggcgaggatttgcggatgaagaagtta |
24168589 |
T |
|
| Q |
201 |
aagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaattgtaagaagtgaaattgtagcgcggaccttacaaggaagaacaggtt |
300 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||| ||||||| ||||||| || |||||||||||| |||||||| ||| |||| ||||| ||||| |
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| T |
24168588 |
aagagacggcggttgaatgtgccgttagagcgacaacaagcgtcggttaaaaatgaaagaagtgaaatggtagcgcgaggcttccaagaaagaagaggtt |
24168489 |
T |
|
| Q |
301 |
tgggtttatttgt |
313 |
Q |
| |
|
||||||| ||||| |
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|
| T |
24168488 |
tgggtttgtttgt |
24168476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 24151961 - 24151676
Alignment:
| Q |
1 |
tgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaaca------------gt |
88 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||||||| ||||| |||| |||||||||| | || || ||||||||||| || |
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| T |
24151961 |
tgaagccaccaccgtggaagtaaatgatgacaggaagggaggttgttttagtggcaccaccatctccagtaacctctccggcaacttctccggcgacggt |
24151862 |
T |
|
| Q |
89 |
tggagtaaagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgaga |
188 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||||| ||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||| |||||| |
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| T |
24151861 |
gggagtgaagagacgaaaccaaacgttattttcggtgttaacggtaatgtctttggtggaaacgccgttaacgggagtggagttaggtgaggcattgaga |
24151762 |
T |
|
| Q |
189 |
tcgaagaagttaaagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaaattgtaagaagtgaaattgtagc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||| | |||||||| ||||| || |||||||||||| ||||| |
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|
| T |
24151761 |
ctgaagaagttaaagagacggcggttgacggtgccgttagagcgagaagaagcgtcgaataaaagtgaaagaagtgaaatggtagc |
24151676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 24112575 - 24112443
Alignment:
| Q |
96 |
aagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaaga |
195 |
Q |
| |
|
|||||||||||||||| ||| | ||| | ||||||| |||||||||| |||||||||||||||| || |||||||||| || |||||| |||| |||| |
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| T |
24112575 |
aagagacggaaccaaacgttatcttctgcgttaacgataacgtctttggtggaaacgccgttaacagggatggcgttaggggaagatttgcgatctaaga |
24112476 |
T |
|
| Q |
196 |
agttaaagagacggcggttgacggtaccgttag |
228 |
Q |
| |
|
| |||| | ||||||||| ||||| ||||||| |
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|
| T |
24112475 |
aattaagaaaacggcggttaacggtgccgttag |
24112443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 24107459 - 24107298
Alignment:
| Q |
90 |
ggagtaaagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagat |
189 |
Q |
| |
|
||||| |||||||||||||||| || |||||| | ||| || | ||||||||||||||| |||||||| ||||| || |||| || | |||| || |
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|
| T |
24107459 |
ggagtgaagagacggaaccaaattttactttcggcatcaacagttatgtcttttgtggaaacaccgttaatgggagttgctttagccgatgttttgttat |
24107360 |
T |
|
| Q |
190 |
cgaagaagttaaagagacggcggttgacggtaccgttagctcgacatgaagcgtccgttaaa |
251 |
Q |
| |
|
| || ||||| | ||||||||||| || |||| |||| |||||||| ||||||||||||| |
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|
| T |
24107359 |
ctaaaaagttgagaagacggcggttaacactaccattagatcgacatgcagcgtccgttaaa |
24107298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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