View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14587_low_8 (Length: 311)
Name: NF14587_low_8
Description: NF14587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14587_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 52464268 - 52464549
Alignment:
| Q |
18 |
acattgaatttgaacaaaatccagattgctgtcgtttagtttaagctctacagactcataatttaatcaaactcaacatgaatt-aagtaatttttcttt |
116 |
Q |
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| T |
52464268 |
acattgaatttgaacaaaatccagagtgctgtcgtttagtttaagctctacagagtcataatttaatcaaactcaacatgaattcaagtaatttttcttt |
52464367 |
T |
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| Q |
117 |
atgaaatggagtattttcttttcatctagactattcaaagggaagtgtaggtctgtgttatcatcatcgatcaaatgctgtttttggaacggataaaaga |
216 |
Q |
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| T |
52464368 |
atgtaatggagtattttcttttcatctagactattcaaagggaagtgtaggtctgtgttatcatcatcgatcaaatgctgtttttggaacggataaaaga |
52464467 |
T |
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| Q |
217 |
attaagcctctgcaacctcaattgcttcttaaacatgtttataaaatcatcagcttttgcatcatccgcttcatcttcttct |
298 |
Q |
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| T |
52464468 |
attaagcctctgcaacctcaattgcttcttaaacatgtttataaaatcatcagcttttgcatcatccgcttcatcttcttct |
52464549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 52483604 - 52483705
Alignment:
| Q |
195 |
tgtttttggaacggataaaagaattaagcctctgcaacctcaattgcttcttaaacatgtttataaaatcatcagcttttgcatcatccgcttcatcttc |
294 |
Q |
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||||| || |||| |||||||||| |||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||| |
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| T |
52483604 |
tgtttctgtaacgcataaaagaatcaagcctctgcaaccggagttgcttcttaaacctgtttatgaaatcatcagcttttgcatcaacagcttcatcttc |
52483703 |
T |
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| Q |
295 |
tt |
296 |
Q |
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|| |
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| T |
52483704 |
tt |
52483705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 17236373 - 17236307
Alignment:
| Q |
214 |
agaattaagcctctgcaacctcaattgcttcttaaacatgtttataaaatcatcagcttttgcatca |
280 |
Q |
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| T |
17236373 |
agaatcaagcctttccaacctaagttgctgcttaaacctctttataaaatcatcagcctttgcatca |
17236307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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