View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14588_high_1 (Length: 446)
Name: NF14588_high_1
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 17277716 - 17277299
Alignment:
| Q |
20 |
ttagaagactatagtggaaacaaaaacatgtcatgcattggtcaaacatttgactataaatctcatctaacacttacaattattattgtcaaaggacttt |
119 |
Q |
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| T |
17277716 |
ttagaaaactatagtggaaacaaaaacacgtcatgcattggtcaaacgttagactataaatctcatctaacacttacaattattattgtcaaaggacttt |
17277617 |
T |
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| Q |
120 |
ccacatttattttttcaaacacactatttaaatgnnnnnnnaatcttaggaatcgacatatacctgtggctataactattctcatttataattcttggat |
219 |
Q |
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| T |
17277616 |
ccacatttattttttcaaacacactatttaaatgtttttttaatcttaggaatcgacatatacctgtggctataactattctcatttataattcttggat |
17277517 |
T |
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| Q |
220 |
tggatgactaaaatgcaccactaccatagtgtacaatgaaggtgcttttggacaaaagtacattagatgctcttgtaaagcttgattttgatatatggtt |
319 |
Q |
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| T |
17277516 |
tggatgactaaaatgcaccactaacatagtgtacaatgaaggtgcttttggacaaaagtacattagatgctcttgtaaagcttgattttgatatatggtt |
17277417 |
T |
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| Q |
320 |
gaacaaatgtgacaacatgaagaattgagattattatgaatggttggaagaagaagctagctacaagacaaaaatttgtagtcaattttttctaaagaca |
419 |
Q |
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| T |
17277416 |
gaacaaatgtgacaacatgaagaattgagattattatgaatggttggaagaagaagctagctacaagacaaaaatttgtagtcaattttttctaaagaca |
17277317 |
T |
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| Q |
420 |
aaagtgtacgtaccctct |
437 |
Q |
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| T |
17277316 |
aaagtgtacgtaccctct |
17277299 |
T |
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