View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14588_high_12 (Length: 208)
Name: NF14588_high_12
Description: NF14588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14588_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 36656206 - 36656380
Alignment:
| Q |
14 |
cacagacagagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36656206 |
cacagacagagattcctaattcctcgaggaaggtattatgggagcaaacatagtctaaaacatttttaagaagttgaggctcaatctcacctcgacggtc |
36656305 |
T |
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| Q |
114 |
aagatcaaaagcttgcattg-agttgaggtatctcgaagagtcaatatcttagaaacgaatatgtcaaaattctc |
187 |
Q |
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| T |
36656306 |
aagatcaaaagcctgcattgcagttgaggtatctcgaagagtcaatatcttagaaacgaatatgtcaaaattctc |
36656380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 36636736 - 36636885
Alignment:
| Q |
18 |
gacagagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaaga |
117 |
Q |
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||||||||||||||| |||| |||| ||||||||||||| ||||||||| ||||| |||||||| |||||||||||||| | ||| |||||||||| |
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| T |
36636736 |
gacagagattcctaaatcctggaggtgggtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaaga |
36636835 |
T |
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| Q |
118 |
tcaaaagcttgcattg-agttgaggtatctcgaagagtcaatatcttaga |
166 |
Q |
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|||| ||| |||| || |||||||||||| |||||||||||||| ||||| |
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| T |
36636836 |
tcaagagcgtgcagtgcagttgaggtatcacgaagagtcaatatgttaga |
36636885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 35968611 - 35968443
Alignment:
| Q |
14 |
cacagacagagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtc |
113 |
Q |
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| T |
35968611 |
cacagacagagatttctaattccttaacgtgtgtattattggaccaaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtc |
35968512 |
T |
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| Q |
114 |
aagatcaaaagcttgcattg-agttgaggtatctcgaagagtcaatatcttagaaacgaatatgtcaaa |
181 |
Q |
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| T |
35968511 |
aatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaa |
35968443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 36643434 - 36643600
Alignment:
| Q |
21 |
agagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatca |
120 |
Q |
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| T |
36643434 |
agagattcctaattcgtggaggtgggtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattg |
36643533 |
T |
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| Q |
121 |
aaagcttgcattg-agttgaggtatctcgaagagtcaatatcttagaaacgaatatgtcaaaattct |
186 |
Q |
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| T |
36643534 |
agagcttgcagagaagttgagctattgcgaagagtcaaaatgttagacacgaatatggcaaatttct |
36643600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 36909840 - 36909737
Alignment:
| Q |
18 |
gacagagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaaga |
117 |
Q |
| |
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|||||||||||||||||| | |||| |||||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| | ||||||||| |
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| T |
36909840 |
gacagagattcctaattcatggaggtgggtattatgggaagtaacatagtttaaaatctttttaaggagttgaggctcaatatcaccacggcggtcaaga |
36909741 |
T |
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| Q |
118 |
tcaa |
121 |
Q |
| |
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|||| |
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| T |
36909740 |
tcaa |
36909737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 42602676 - 42602832
Alignment:
| Q |
21 |
agagattcctaattcctcgaggaaggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatca |
120 |
Q |
| |
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|||||||||||||| | |||| |||||||||||| ||||| ||| || ||| |||||||| ||||| |||||||| ||| ||||| ||||||| |
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| T |
42602676 |
agagattcctaattgttggaggtgggtattatgggaataaacacagtctagaacctttttaaggagttgcggctcaatactaccatgacggtgaagatca |
42602775 |
T |
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| Q |
121 |
aaagcttgcattg-agttgaggtatctcgaagagtcaatatcttagaaacgaatatg |
176 |
Q |
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| ||| |||| || |||||||||||| ||||||||||| |||||||| || |||||| |
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| T |
42602776 |
agagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatg |
42602832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 19658159 - 19658280
Alignment:
| Q |
45 |
ggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatcaaaagcttgcattg-agttgaggta |
143 |
Q |
| |
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||||||||| ||||||||||| | ||||| |||||||| | | |||||||||| | ||| |||||||||||||| || |||| || | |||||||| |
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| T |
19658159 |
ggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaattgaggta |
19658258 |
T |
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| Q |
144 |
tctcgaagagtcaatatcttag |
165 |
Q |
| |
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|| ||||||||||| ||||||| |
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| T |
19658259 |
tcacgaagagtcaaaatcttag |
19658280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 19674998 - 19675119
Alignment:
| Q |
45 |
ggtattatgggagcaaacatagtataaaacatttttaagaagttgaggctcaatctcacctcaacggtcaagatcaaaagcttgcattg-agttgaggta |
143 |
Q |
| |
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||||||||| ||||||||||| | ||||| |||||||| | | |||||||||| | ||| |||||||||||||| || |||| || | |||||||| |
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| T |
19674998 |
ggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaattgaggta |
19675097 |
T |
|
| Q |
144 |
tctcgaagagtcaatatcttag |
165 |
Q |
| |
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|| ||||||||||| ||||||| |
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| T |
19675098 |
tcacgaagagtcaaaatcttag |
19675119 |
T |
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